Factsheet for TraesCS4A01G110400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7B01G254000.2
TraesCS7D01G155200.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07140.1	TraesCS7B01G254000.2	AT5G20010.1	9025305
AT1G07140.1	TraesCS7D01G155200.2	AT5G20010.1	9025305
AT1G07140.1	TraesCS7B01G254000.2	AT5G20020.1	9025305
AT1G07140.1	TraesCS7D01G155200.2	AT5G20020.1	9025305
AT1G07140.1	TraesCS7B01G254000.2	AT5G55190.1	21798944
AT1G07140.1	TraesCS7D01G155200.2	AT5G55190.1	21798944
AT1G07140.1	TraesCS7B01G254000.2	AT5G55190.1	9025305
AT1G07140.1	TraesCS7D01G155200.2	AT5G55190.1	9025305
AT2G30060.1	TraesCS7B01G254000.2	AT5G20010.1	9025305
AT2G30060.1	TraesCS7D01G155200.2	AT5G20010.1	9025305
AT2G30060.1	TraesCS7B01G254000.2	AT5G20020.1	9025305
AT2G30060.1	TraesCS7D01G155200.2	AT5G20020.1	9025305
AT2G30060.1	TraesCS7B01G254000.2	AT5G55190.1	9025305
AT2G30060.1	TraesCS7D01G155200.2	AT5G55190.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G193600.1	Wheat	cytosol	99.03	99.03
TraesCS4D01G194600.1	Wheat	cytosol	96.62	97.09
EER92413	Sorghum	cytosol	81.16	80.38
Os03t0292800-01	Rice	plastid	80.19	79.43
HORVU4Hr1G056140.3	Barley	plastid	97.58	73.19
Zm00001d047727_P002	Maize	cytosol	77.78	71.24
Zm00001d028755_P001	Maize	cytosol	76.81	70.67
TraesCS1A01G223800.1	Wheat	cytosol	74.4	69.37
GSMUA_Achr11P...	Banana	cytosol	67.63	67.63
GSMUA_Achr7P22420_001	Banana	cytosol	64.73	65.37
GSMUA_Achr11P...	Banana	cytosol	67.15	65.26
GSMUA_Achr10P...	Banana	cytosol	65.7	64.45
VIT_04s0008g01410.t01	Wine grape	cytosol	62.32	58.64
CDX86501	Canola	cytosol	12.08	58.14
KRH35051	Soybean	endoplasmic reticulum	60.87	57.8
KRG91719	Soybean	endoplasmic reticulum	61.84	57.4
CDY24034	Canola	cytosol	59.42	57.21
AT2G30060.1	Thale cress	cytosol	59.9	57.14
CDX84862	Canola	cytosol	60.87	57.01
Bra022775.1-P	Field mustard	cytosol	60.39	56.56
Solyc08g062660.2.1	Tomato	nucleus, plastid	60.87	56.25
PGSC0003DMT400021160	Potato	cytosol	60.39	55.8
CDY06679	Canola	cytosol	58.94	55.45
Bra015554.1-P	Field mustard	cytosol	58.94	55.45
KRH65697	Soybean	cytosol	52.66	54.77
CDY59068	Canola	cytosol	59.42	54.67
CDX86496	Canola	cytosol	58.94	54.46
CDY15604	Canola	cytosol	58.94	54.46
CDY09935	Canola	cytosol	58.94	54.22
Bra030675.1-P	Field mustard	cytosol	58.45	54.02
Bra031555.1-P	Field mustard	cytosol	59.42	53.95
AT5G58590.1	Thale cress	cytosol	57.0	53.88
AT1G07140.1	Thale cress	cytosol	58.94	53.51
KRH75945	Soybean	cytosol	58.94	53.28
CDX80354	Canola	cytosol	20.29	47.19
CDY10250	Canola	plastid	50.24	42.28

Protein Annotations

EnsemblPlants:TraesCS4A01G110400.1	EnsemblPlantsGene:TraesCS4A01G110400	Gene3D:2.30.29.30	GO:GO:0006810	GO:GO:0008150	GO:GO:0046907
InterPro:IPR000156	InterPro:IPR011993	InterPro:PH-like_dom_sf	InterPro:Ran_bind_dom	ncoils:Coil	PANTHER:PTHR23138
PANTHER:PTHR23138:SF105	PFAM:PF00638	PFscan:PS50196	SEG:seg	SMART:SM00160	SUPFAM:SSF50729
TIGR:cd13179	MapMan:23.5.1.6	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:134634166..134636691

Molecular Weight (calculated)

23181.1 Da

IEP (calculated)

4.402

GRAVY (calculated)

-0.745

Length

207 amino acids

Sequence
(BLAST)

001: MADPAEHREE EEEAAAAGEE EDTGAQIAPI VKLEEVAITT GEEDEDVLLD MKAKLYRFDK DGGQWKERGT GAVKLLKHKE TAKVRLVMRQ AKTLKICANH
101: LVVATTKMQE HAGSDKSCVW HALDFADCEL KEEMFAIRFG SVENCKKFKD LVDEIAEQQG KNEEKESEEV SSAAELVEKL TVTEVKKEEQ TEKVETPAVD
201: DKKDAEE

Best Arabidopsis Sequence Match ( AT5G58590.1 )
(BLAST)

001: MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST

Arabidopsis Description

RANBP1CAt5g58590 [Source:UniProtKB/TrEMBL;Acc:Q1WWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.