Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86496 | Canola | cytosol | 88.6 | 90.18 |
| Bra030675.1-P | Field mustard | cytosol | 88.16 | 89.73 |
| CDY15604 | Canola | cytosol | 87.72 | 89.29 |
| CDY09935 | Canola | cytosol | 85.53 | 86.67 |
| Bra015554.1-P | Field mustard | cytosol | 83.33 | 86.36 |
| CDY06679 | Canola | cytosol | 83.33 | 86.36 |
| CDY59068 | Canola | cytosol | 83.33 | 84.44 |
| Bra031555.1-P | Field mustard | cytosol | 82.89 | 82.89 |
| AT2G30060.1 | Thale cress | cytosol | 76.32 | 80.18 |
| AT5G58590.1 | Thale cress | cytosol | 70.61 | 73.52 |
| Solyc06g082120.2.1 | Tomato | extracellular | 65.79 | 71.09 |
| VIT_06s0004g06880.t01 | Wine grape | cytosol | 68.86 | 70.4 |
| PGSC0003DMT400052941 | Potato | cytosol | 64.91 | 69.81 |
| PGSC0003DMT400078073 | Potato | cytosol | 66.67 | 68.78 |
| KRH35051 | Soybean | endoplasmic reticulum | 64.47 | 67.43 |
| KRG91719 | Soybean | endoplasmic reticulum | 65.79 | 67.26 |
| CDY10250 | Canola | plastid | 69.3 | 64.23 |
| GSMUA_Achr7P22420_001 | Banana | cytosol | 56.58 | 62.93 |
| Os03t0292800-01 | Rice | plastid | 56.58 | 61.72 |
| GSMUA_Achr11P... | Banana | cytosol | 54.82 | 60.39 |
| TraesCS4D01G194600.1 | Wheat | cytosol | 54.39 | 60.19 |
| Zm00001d010504_P001 | Maize | extracellular | 57.89 | 59.73 |
| EES19356 | Sorghum | cytosol | 57.46 | 59.28 |
| GSMUA_Achr10P... | Banana | cytosol | 54.82 | 59.24 |
| TraesCS4A01G110400.1 | Wheat | cytosol | 53.51 | 58.94 |
| HORVU1Hr1G059970.2 | Barley | cytosol | 56.58 | 58.9 |
| EER92413 | Sorghum | cytosol | 53.95 | 58.85 |
| TraesCS4B01G193600.1 | Wheat | cytosol | 53.07 | 58.45 |
| GSMUA_Achr11P... | Banana | cytosol | 54.39 | 58.22 |
| TraesCS1A01G223800.1 | Wheat | cytosol | 56.58 | 58.11 |
| TraesCS1B01G237100.1 | Wheat | cytosol | 56.58 | 58.11 |
| TraesCS1D01G225400.1 | Wheat | cytosol | 56.58 | 58.11 |
| Os05t0350600-01 | Rice | cytosol, plasma membrane, plastid | 55.26 | 57.27 |
| GSMUA_Achr9P04480_001 | Banana | cytosol | 53.95 | 55.66 |
| Zm00001d028755_P001 | Maize | cytosol | 53.95 | 54.67 |
| Zm00001d047727_P002 | Maize | cytosol | 53.51 | 53.98 |
| Zm00001d037993_P001 | Maize | cytosol | 57.46 | 47.46 |
| HORVU4Hr1G056140.3 | Barley | plastid | 53.51 | 44.2 |
Protein Annotations
| Gene3D:2.30.29.30 | MapMan:23.5.1.6 | EntrezGene:837225 | UniProt:A0A178WG12 | ProteinID:AAF82206.1 | ProteinID:AEE28081.1 |
| EMBL:AF057024 | EMBL:AF370491 | EMBL:AF410294 | ArrayExpress:AT1G07140 | EnsemblPlantsGene:AT1G07140 | RefSeq:AT1G07140 |
| TAIR:AT1G07140 | RefSeq:AT1G07140-TAIR-G | EnsemblPlants:AT1G07140.1 | TAIR:AT1G07140.1 | EMBL:AY097364 | Unigene:At.22610 |
| EMBL:BT002193 | ncoils:Coil | GO:GO:0000082 | GO:GO:0003674 | GO:GO:0005096 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 |
| GO:GO:0005643 | GO:GO:0005737 | GO:GO:0006405 | GO:GO:0006511 | GO:GO:0006606 | GO:GO:0006810 |
| GO:GO:0007049 | GO:GO:0007051 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008536 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0043547 |
| GO:GO:0046907 | GO:GO:0051028 | InterPro:IPR000156 | InterPro:IPR011993 | RefSeq:NP_172194.1 | ProteinID:OAP17297.1 |
| PFAM:PF00638 | InterPro:PH-like_dom_sf | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50196 | PANTHER:PTHR23138 | PANTHER:PTHR23138:SF107 | UniProt:Q9LMK7 | InterPro:Ran_bind_dom | Symbol:SIRANBP |
| SMART:SM00160 | SUPFAM:SSF50729 | UniParc:UPI00000ABF67 | EMBL:X97377 | SEG:seg | : |
Description
RANBP1ARan-binding protein 1 homolog a [Source:UniProtKB/Swiss-Prot;Acc:Q9LMK7]
Coordinates
chr1:-:2191679..2193836
Molecular Weight (calculated)
25602.6 Da
IEP (calculated)
4.612
GRAVY (calculated)
-0.985
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MATNEPEHEH RDEEEAGANE DEDTGAQVAP IVRLEEVAVT TGEEDEDAVL DLKSKLYRFD KDANQWKERG AGTVKFLKHK NTGKIRLVMR QSKTLKICAN
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.