CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52483
KRH52484
KRH52485
KRH61808
KRH61809
KRH61811

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07140.1	KRH52483	AT5G55190.1	21798944
AT1G07140.1	KRH52484	AT5G55190.1	21798944
AT1G07140.1	KRH52485	AT5G55190.1	21798944
AT1G07140.1	KRH61808	AT5G55190.1	21798944
AT1G07140.1	KRH61809	AT5G55190.1	21798944
AT1G07140.1	KRH61811	AT5G55190.1	21798944
AT1G07140.1	KRH52483	AT5G55190.1	9025305
AT1G07140.1	KRH52484	AT5G55190.1	9025305
AT1G07140.1	KRH52485	AT5G55190.1	9025305
AT1G07140.1	KRH61808	AT5G55190.1	9025305
AT1G07140.1	KRH61809	AT5G55190.1	9025305
AT1G07140.1	KRH61811	AT5G55190.1	9025305
AT2G30060.1	KRH52483	AT5G55190.1	9025305
AT2G30060.1	KRH52484	AT5G55190.1	9025305
AT2G30060.1	KRH52485	AT5G55190.1	9025305
AT2G30060.1	KRH61808	AT5G55190.1	9025305
AT2G30060.1	KRH61809	AT5G55190.1	9025305
AT2G30060.1	KRH61811	AT5G55190.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35051	Soybean	endoplasmic reticulum	84.3	86.24
CDX86501	Canola	cytosol	16.14	83.72
Solyc06g082120.2.1	Tomato	extracellular	69.96	73.93
PGSC0003DMT400078073	Potato	cytosol	72.65	73.3
VIT_06s0004g06880.t01	Wine grape	cytosol	70.85	70.85
PGSC0003DMT400052941	Potato	cytosol	66.37	69.81
Bra022775.1-P	Field mustard	cytosol	67.71	68.33
AT2G30060.1	Thale cress	cytosol	66.37	68.2
AT5G58590.1	Thale cress	cytosol	65.02	66.21
AT1G07140.1	Thale cress	cytosol	67.26	65.79
Bra030675.1-P	Field mustard	cytosol	65.92	65.62
Bra015554.1-P	Field mustard	cytosol	63.68	64.55
GSMUA_Achr7P22420_001	Banana	cytosol	59.19	64.39
Bra031555.1-P	Field mustard	cytosol	65.47	64.04
GSMUA_Achr11P...	Banana	cytosol	58.74	63.28
Os03t0292800-01	Rice	plastid	58.74	62.68
TraesCS4D01G194600.1	Wheat	cytosol	57.85	62.62
GSMUA_Achr10P...	Banana	cytosol	58.74	62.09
TraesCS4A01G110400.1	Wheat	cytosol	57.4	61.84
TraesCS4B01G193600.1	Wheat	cytosol	56.95	61.35
EER92413	Sorghum	cytosol	56.95	60.77
HORVU1Hr1G059970.2	Barley	cytosol	58.74	59.82
KRH65697	Soybean	cytosol	53.36	59.8
KRH75945	Soybean	cytosol	60.54	58.95
GSMUA_Achr11P...	Banana	cytosol	55.16	57.75
GSMUA_Achr9P04480_001	Banana	cytosol	56.5	57.01
Os05t0350600-01	Rice	cytosol, plasma membrane, plastid	56.05	56.82
TraesCS1B01G237100.1	Wheat	cytosol	56.5	56.76
TraesCS1D01G225400.1	Wheat	cytosol	56.5	56.76
TraesCS1A01G223800.1	Wheat	cytosol	56.5	56.76
Zm00001d047727_P002	Maize	cytosol	56.5	55.75
Zm00001d028755_P001	Maize	cytosol	56.05	55.56
EES19356	Sorghum	cytosol	54.71	55.2
Zm00001d010504_P001	Maize	extracellular	54.71	55.2
CDX80354	Canola	cytosol	21.52	53.93
HORVU4Hr1G056140.3	Barley	plastid	57.85	46.74
Zm00001d037993_P001	Maize	cytosol	55.16	44.57

Protein Annotations

EntrezGene:100781537	Gene3D:2.30.29.30	MapMan:23.5.1.6	EMBL:ACUP02012701	EnsemblPlantsGene:GLYMA_20G170700	GO:GO:0000082
GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006405	GO:GO:0006511	GO:GO:0006606
GO:GO:0006810	GO:GO:0007049	GO:GO:0007051	GO:GO:0008150	GO:GO:0008152	GO:GO:0008536
GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0030234	GO:GO:0043547
GO:GO:0046907	UniProt:I1NH59	InterPro:IPR000156	InterPro:IPR011993	EnsemblPlants:KRG91719	ProteinID:KRG91719
ProteinID:KRG91719.1	PFAM:PF00638	InterPro:PH-like_dom_sf	PFscan:PS50196	PANTHER:PTHR23138	PANTHER:PTHR23138:SF107
InterPro:Ran_bind_dom	SMART:SM00160	SUPFAM:SSF50729	UniParc:UPI000233D956	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:40860042..40863083

Molecular Weight (calculated)

24758.6 Da

IEP (calculated)

4.497

GRAVY (calculated)

-0.861

Length

223 amino acids

Sequence
(BLAST)

001: MSSADPEHRE EEEAPAVGDD EDTGAHVAPI VKLEEVAVTT GEEDEDAILD LKSKLYRFDK DGNQWKERGA GTVKFLKHKA TGKVRLLMRQ SKTLKICANH
101: LILPTMSVQE HAGNEKSCVW HARDFADGEL KDELFCIRFP SIENCKSFME TFQEVAESQK AEDEKESADA AGLIEKLSVE EKADAEKKDE EKSEDKTVEK
201: ESASGKESKA VEDKKAEEPA SSA

Best Arabidopsis Sequence Match ( AT2G30060.1 )
(BLAST)

001: MASISNEPER ENRDEEETGA NEDEDTGAQV APIVRLEEVA VTTGEEDEDT ILDLKSKLYR FDKDGSQWKE RGAGTVKFLK HRVSGKIRLV MRQSKTLKIC
101: ANHLVGSGMS VQEHAGNDKS CVWHARDFSD GELKDELFCI RFASVENCKA FMQKFKEVAE SEEEKEESKD ASDTAGLLEK LTVEEKESEK KPVEKAEENK
201: KSEAVEEKKT EESVPSA

Arabidopsis Description

RANBP1BRan-binding protein 1 homolog b [Source:UniProtKB/Swiss-Prot;Acc:Q8RWG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.