Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002926.1-P | |
| Bra035562.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30060.1 | Bra002926.1-P | AT5G55190.1 | 9025305 |
| AT2G30060.1 | Bra035562.1-P | AT5G55190.1 | 9025305 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84862 | Canola | cytosol | 99.09 | 99.09 |
| CDY24034 | Canola | cytosol | 92.76 | 95.35 |
| AT2G30060.1 | Thale cress | cytosol | 86.88 | 88.48 |
| Bra030675.1-P | Field mustard | cytosol | 80.09 | 79.02 |
| Bra015554.1-P | Field mustard | cytosol | 74.66 | 75.0 |
| Bra031555.1-P | Field mustard | cytosol | 76.47 | 74.12 |
| Solyc06g082120.2.1 | Tomato | extracellular | 66.52 | 69.67 |
| VIT_06s0004g06880.t01 | Wine grape | cytosol | 68.78 | 68.16 |
| KRG91719 | Soybean | endoplasmic reticulum | 68.33 | 67.71 |
| KRH35051 | Soybean | endoplasmic reticulum | 66.52 | 67.43 |
| GSMUA_Achr7P22420_001 | Banana | cytosol | 60.63 | 65.37 |
| PGSC0003DMT400078073 | Potato | cytosol | 65.16 | 65.16 |
| PGSC0003DMT400052941 | Potato | cytosol | 62.44 | 65.09 |
| GSMUA_Achr11P... | Banana | cytosol | 58.37 | 62.32 |
| Os03t0292800-01 | Rice | plastid | 58.37 | 61.72 |
| TraesCS4D01G194600.1 | Wheat | cytosol | 57.01 | 61.16 |
| EER92413 | Sorghum | cytosol | 57.47 | 60.77 |
| TraesCS4A01G110400.1 | Wheat | cytosol | 56.56 | 60.39 |
| GSMUA_Achr10P... | Banana | cytosol | 57.47 | 60.19 |
| TraesCS4B01G193600.1 | Wheat | cytosol | 56.11 | 59.9 |
| GSMUA_Achr11P... | Banana | cytosol | 57.01 | 59.15 |
| Os05t0350600-01 | Rice | cytosol, plasma membrane, plastid | 58.82 | 59.09 |
| HORVU1Hr1G059970.2 | Barley | cytosol | 57.92 | 58.45 |
| TraesCS1A01G223800.1 | Wheat | cytosol | 58.37 | 58.11 |
| TraesCS1B01G237100.1 | Wheat | cytosol | 58.37 | 58.11 |
| TraesCS1D01G225400.1 | Wheat | cytosol | 58.37 | 58.11 |
| EES19356 | Sorghum | cytosol | 57.01 | 57.01 |
| Zm00001d010504_P001 | Maize | extracellular | 55.66 | 55.66 |
| Zm00001d028755_P001 | Maize | cytosol | 56.56 | 55.56 |
| GSMUA_Achr9P04480_001 | Banana | cytosol | 54.75 | 54.75 |
| Zm00001d047727_P002 | Maize | cytosol | 55.66 | 54.42 |
| HORVU4Hr1G056140.3 | Barley | plastid | 57.01 | 45.65 |
| Zm00001d037993_P001 | Maize | cytosol | 56.11 | 44.93 |
Protein Annotations
| Gene3D:2.30.29.30 | MapMan:23.5.1.6 | EnsemblPlantsGene:Bra022775 | EnsemblPlants:Bra022775.1 | EnsemblPlants:Bra022775.1-P | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0046907 | InterPro:IPR000156 |
| InterPro:IPR011993 | UniProt:M4E1X5 | PFAM:PF00638 | InterPro:PH-like_dom_sf | PFscan:PS50196 | PANTHER:PTHR23138 |
| PANTHER:PTHR23138:SF107 | InterPro:Ran_bind_dom | SMART:SM00160 | SUPFAM:SSF50729 | UniParc:UPI00025401D5 | SEG:seg |
Description
AT2G30060 (E=1e-079) | Ran-binding protein 1b (RanBP1b)
Coordinates
chrA03:+:6987029..6988656
Molecular Weight (calculated)
24815.7 Da
IEP (calculated)
4.511
GRAVY (calculated)
-0.930
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MASISNEPER EHRDEEESGA NEDEDTGAQV APIIKLEEVA VTTGEENEDA ILDLKSKLYR FDKDGSQWKE RGAGTVKFLK HKESGKIRLV MRQSKTLKIC
101: ANHLVTSGMS VQEHAGNDKS CVWHARDFSD GELKDELFCI RFASVENCKA FMQKFKEVTD SEEEKEESKE ASDTAGLLEK LTVEEKDTEE KKEEKPVEKV
201: ASAEAEKAVE EKKTEESVPS A
101: ANHLVTSGMS VQEHAGNDKS CVWHARDFSD GELKDELFCI RFASVENCKA FMQKFKEVTD SEEEKEESKE ASDTAGLLEK LTVEEKDTEE KKEEKPVEKV
201: ASAEAEKAVE EKKTEESVPS A
001: MASISNEPER ENRDEEETGA NEDEDTGAQV APIVRLEEVA VTTGEEDEDT ILDLKSKLYR FDKDGSQWKE RGAGTVKFLK HRVSGKIRLV MRQSKTLKIC
101: ANHLVGSGMS VQEHAGNDKS CVWHARDFSD GELKDELFCI RFASVENCKA FMQKFKEVAE SEEEKEESKD ASDTAGLLEK LTVEEKESEK KPVEKAEENK
201: KSEAVEEKKT EESVPSA
101: ANHLVGSGMS VQEHAGNDKS CVWHARDFSD GELKDELFCI RFASVENCKA FMQKFKEVAE SEEEKEESKD ASDTAGLLEK LTVEEKESEK KPVEKAEENK
201: KSEAVEEKKT EESVPSA
Arabidopsis Description
RANBP1BRan-binding protein 1 homolog b [Source:UniProtKB/Swiss-Prot;Acc:Q8RWG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.