Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d010504_P001 | Maize | extracellular | 73.19 | 91.4 |
| EES19356 | Sorghum | cytosol | 72.1 | 90.05 |
| TraesCS1D01G225400.1 | Wheat | cytosol | 64.13 | 79.73 |
| TraesCS1A01G223800.1 | Wheat | cytosol | 64.13 | 79.73 |
| TraesCS1B01G237100.1 | Wheat | cytosol | 63.77 | 79.28 |
| Os05t0350600-01 | Rice | cytosol, plasma membrane, plastid | 63.04 | 79.09 |
| HORVU1Hr1G059970.2 | Barley | cytosol | 59.42 | 74.89 |
| GSMUA_Achr9P04480_001 | Banana | cytosol | 53.62 | 66.97 |
| Zm00001d028755_P001 | Maize | cytosol | 52.17 | 64.0 |
| Zm00001d047727_P002 | Maize | cytosol | 52.17 | 63.72 |
| CDX86501 | Canola | cytosol | 9.78 | 62.79 |
| CDY15604 | Canola | cytosol | 47.83 | 58.93 |
| CDY06679 | Canola | cytosol | 46.74 | 58.64 |
| Bra015554.1-P | Field mustard | cytosol | 46.74 | 58.64 |
| AT2G30060.1 | Thale cress | cytosol | 46.01 | 58.53 |
| CDX86496 | Canola | cytosol | 47.1 | 58.04 |
| CDY09935 | Canola | cytosol | 47.1 | 57.78 |
| CDY59068 | Canola | cytosol | 47.1 | 57.78 |
| VIT_04s0008g01410.t01 | Wine grape | cytosol | 46.01 | 57.73 |
| CDY24034 | Canola | cytosol | 44.93 | 57.67 |
| Bra030675.1-P | Field mustard | cytosol | 46.74 | 57.59 |
| AT1G07140.1 | Thale cress | cytosol | 47.46 | 57.46 |
| KRH75945 | Soybean | cytosol | 47.46 | 57.21 |
| KRH35051 | Soybean | endoplasmic reticulum | 44.93 | 56.88 |
| Bra031555.1-P | Field mustard | cytosol | 46.74 | 56.58 |
| CDX84862 | Canola | cytosol | 45.29 | 56.56 |
| AT5G58590.1 | Thale cress | cytosol | 44.57 | 56.16 |
| Bra022775.1-P | Field mustard | cytosol | 44.93 | 56.11 |
| PGSC0003DMT400021160 | Potato | cytosol | 45.29 | 55.8 |
| Solyc08g062660.2.1 | Tomato | nucleus, plastid | 45.29 | 55.8 |
| KRH65697 | Soybean | cytosol | 40.22 | 55.78 |
| KRG91719 | Soybean | endoplasmic reticulum | 44.57 | 55.16 |
| CDY10250 | Canola | plastid | 42.39 | 47.56 |
| CDX80354 | Canola | cytosol | 15.22 | 47.19 |
Protein Annotations
| EntrezGene:100282524 | Gene3D:2.30.29.30 | MapMan:23.5.1.6 | UniProt:A0A1D6M2N3 | ProteinID:AQK85445.1 | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0046907 |
| InterPro:IPR000156 | InterPro:IPR011993 | PFAM:PF00638 | InterPro:PH-like_dom_sf | PFscan:PS50196 | PANTHER:PTHR23138 |
| PANTHER:PTHR23138:SF105 | InterPro:Ran_bind_dom | SMART:SM00160 | SUPFAM:SSF50729 | UniParc:UPI000844FB12 | EnsemblPlantsGene:Zm00001d037993 |
| EnsemblPlants:Zm00001d037993_P001 | EnsemblPlants:Zm00001d037993_T001 | SEG:seg | : | : | : |
Description
Ran-binding protein 1 homolog a
Coordinates
chr6:+:144580998..144584809
Molecular Weight (calculated)
30230.2 Da
IEP (calculated)
4.346
GRAVY (calculated)
-0.502
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKEPVVER SEASEEEDAS AAAAAGEEED TGAQVAPIVR LEEVLVTTGE EDEDVLLDMK AKLYRFDKDG NQWKERGTGT VKLLKNKETG KVRLVMRQAK
101: TLKICANHLV APTTRMQEHA GSDKSCVWHA SDFADGELKE EMFAIRFGSV ESEFSTSFNL LCPNYMLAAS LHSLSFTIID GLGENLATGL ASAQYIRVSY
201: YKYCDFMYCK KFKELVEEIA ESLTENEDKE GQDGSSTAGL LEKLTVSEGK SEESGKSEST DSGKVTETKA DAAPAE
101: TLKICANHLV APTTRMQEHA GSDKSCVWHA SDFADGELKE EMFAIRFGSV ESEFSTSFNL LCPNYMLAAS LHSLSFTIID GLGENLATGL ASAQYIRVSY
201: YKYCDFMYCK KFKELVEEIA ESLTENEDKE GQDGSSTAGL LEKLTVSEGK SEESGKSEST DSGKVTETKA DAAPAE
001: MGDSENVQQP SKKRGALKQL SRDNPGLDDD DDSAELESGT FKKASDEVLA SRRIVRVKRK EPSAAPVAAS NPFAGIQLVP TTAPASTPVG TNAPLAESKL
101: APAEAVVEDN QKASDIEEGD EVDSKKVDVK DAVGEETEKT KDKDDNHCGK SADVQVAATE VAQMVSCDTN VCNNAVEGTD QTDFPLEKDS GGDQAEKKEK
201: EGNGIEEADK NGDNGAFSSF QQHSSNKNAF TGLASTEASG SSFSFGLVSQ DGSTGTGSLF GFGLPSSNSS SIFGATGSSI IKKSEGSGFP PKQEVSTETG
301: EENEKVAFSA DSIMFEYLDG GWKERGKGEL KVNVSSNDGK ARLVMRAKGN YRLILNASLY PEMKLANMDK KGITFACVNS VSEGKEGLST FALKFKDPTI
401: VEEFRVAIDK HKDSKPMEKA AEKSALPLKT PENSPTATDT
101: APAEAVVEDN QKASDIEEGD EVDSKKVDVK DAVGEETEKT KDKDDNHCGK SADVQVAATE VAQMVSCDTN VCNNAVEGTD QTDFPLEKDS GGDQAEKKEK
201: EGNGIEEADK NGDNGAFSSF QQHSSNKNAF TGLASTEASG SSFSFGLVSQ DGSTGTGSLF GFGLPSSNSS SIFGATGSSI IKKSEGSGFP PKQEVSTETG
301: EENEKVAFSA DSIMFEYLDG GWKERGKGEL KVNVSSNDGK ARLVMRAKGN YRLILNASLY PEMKLANMDK KGITFACVNS VSEGKEGLST FALKFKDPTI
401: VEEFRVAIDK HKDSKPMEKA AEKSALPLKT PENSPTATDT
Arabidopsis Description
NUP50ANuclear pore complex protein NUP50A [Source:UniProtKB/Swiss-Prot;Acc:Q9C829]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.