CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70904
CDY06600
CDY17309
CDY19907
CDY20779

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07140.1	CDX70904	AT5G20010.1	9025305
AT1G07140.1	CDY06600	AT5G55190.1	21798944
AT1G07140.1	CDY17309	AT5G55190.1	21798944
AT1G07140.1	CDY19907	AT5G55190.1	21798944
AT1G07140.1	CDY20779	AT5G55190.1	21798944
AT1G07140.1	CDY06600	AT5G55190.1	9025305
AT1G07140.1	CDY17309	AT5G55190.1	9025305
AT1G07140.1	CDY19907	AT5G55190.1	9025305
AT1G07140.1	CDY20779	AT5G55190.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86501	Canola	cytosol	14.63	83.72
CDY06679	Canola	cytosol	73.17	81.82
CDY15604	Canola	cytosol	67.89	74.55
CDY59068	Canola	cytosol	67.48	73.78
CDX86496	Canola	cytosol	67.07	73.66
CDY09935	Canola	cytosol	66.26	72.44
AT1G07140.1	Thale cress	cytosol	64.23	69.3
CDY24034	Canola	cytosol	57.32	65.58
CDX84862	Canola	cytosol	56.5	62.9
PGSC0003DMT400052941	Potato	cytosol	52.44	60.85
PGSC0003DMT400078073	Potato	cytosol	54.47	60.63
Solyc06g082120.2.1	Tomato	extracellular	51.63	60.19
GSMUA_Achr7P22420_001	Banana	cytosol	45.12	54.15
GSMUA_Achr11P...	Banana	cytosol	45.12	53.62
Os03t0292800-01	Rice	plastid	45.53	53.59
Os05t0350600-01	Rice	cytosol, plasma membrane, plastid	46.75	52.27
GSMUA_Achr11P...	Banana	cytosol	44.72	51.64
TraesCS1D01G225400.1	Wheat	cytosol	46.34	51.35
TraesCS1B01G237100.1	Wheat	cytosol	46.34	51.35
TraesCS1A01G223800.1	Wheat	cytosol	46.34	51.35
GSMUA_Achr10P...	Banana	cytosol	43.9	51.18
EES19356	Sorghum	cytosol	45.94	51.13
EER92413	Sorghum	cytosol	43.09	50.72
HORVU1Hr1G059970.2	Barley	cytosol	45.12	50.68
GSMUA_Achr9P04480_001	Banana	cytosol	45.53	50.68
TraesCS4D01G194600.1	Wheat	cytosol	42.28	50.49
TraesCS4A01G110400.1	Wheat	cytosol	42.28	50.24
Zm00001d010504_P001	Maize	extracellular	45.12	50.23
TraesCS4B01G193600.1	Wheat	cytosol	41.87	49.76
Zm00001d028755_P001	Maize	cytosol	43.5	47.56
Zm00001d047727_P002	Maize	cytosol	42.68	46.46
Zm00001d037993_P001	Maize	cytosol	47.56	42.39
HORVU4Hr1G056140.3	Barley	plastid	42.68	38.04
CDX80354	Canola	cytosol	12.2	33.71

Protein Annotations

Gene3D:2.30.29.30	MapMan:23.5.1.6	GO:A0A078F6V8	UniProt:A0A078F6V8	EnsemblPlants:CDY10250	ProteinID:CDY10250
ProteinID:CDY10250.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0008150
GO:GO:0046907	EnsemblPlantsGene:GSBRNA2T00032076001	InterPro:IPR000156	InterPro:IPR011993	PFAM:PF00638	InterPro:PH-like_dom_sf
PFscan:PS50196	PANTHER:PTHR23138	PANTHER:PTHR23138:SF107	InterPro:Ran_bind_dom	SMART:SM00160	SUPFAM:SSF50729
UniParc:UPI0004EBFD45	SEG:seg	:	:	:	:

Description

BnaC05g04930DBnaC05g04930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6V8]

Coordinates

chrLK032001:-:776162..777857

Molecular Weight (calculated)

28110.3 Da

IEP (calculated)

5.804

GRAVY (calculated)

-0.852

Length

246 amino acids

Sequence
(BLAST)

001: MYSLETGPLL ASFRRAIQFQ PSHSLSPANP RGYLSPQILW RPTNPSTRPE TRKRPELTRL EEVVVTTGEE DEDAVLDLKS KLYRFDKEAN QWKERGAGTV
101: KLLKHKDTGK IRLVMRQSKT LKICANHFVK PGMAVQEHVG NEKSCVWHAL DFADGELKDE LFCIRFASIE NCRLFMQKFN EVAESEAEKE ERKDASETAG
201: LLEKLTVEET KTEEKVKTEV EAEEKKKSEP EKADEEKKTE EAAPST

Best Arabidopsis Sequence Match ( AT1G07140.1 )
(BLAST)

001: MATNEPEHEH RDEEEAGANE DEDTGAQVAP IVRLEEVAVT TGEEDEDAVL DLKSKLYRFD KDANQWKERG AGTVKFLKHK NTGKIRLVMR QSKTLKICAN
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST

Arabidopsis Description

RANBP1ARan-binding protein 1 homolog a [Source:UniProtKB/Swiss-Prot;Acc:Q9LMK7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.