Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400016576 | |
| PGSC0003DMT400076528 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078073 | Potato | cytosol | 76.89 | 73.76 |
| VIT_06s0004g06880.t01 | Wine grape | cytosol | 73.58 | 69.96 |
| CDY59068 | Canola | cytosol | 72.64 | 68.44 |
| KRH35051 | Soybean | endoplasmic reticulum | 69.81 | 67.89 |
| CDX86496 | Canola | cytosol | 71.23 | 67.41 |
| Bra015554.1-P | Field mustard | cytosol | 69.81 | 67.27 |
| CDY06679 | Canola | cytosol | 69.81 | 67.27 |
| CDY09935 | Canola | cytosol | 71.23 | 67.11 |
| CDY15604 | Canola | cytosol | 70.75 | 66.96 |
| Bra030675.1-P | Field mustard | cytosol | 70.28 | 66.52 |
| KRG91719 | Soybean | endoplasmic reticulum | 69.81 | 66.37 |
| Bra031555.1-P | Field mustard | cytosol | 71.23 | 66.23 |
| AT5G58590.1 | Thale cress | cytosol | 67.92 | 65.75 |
| AT1G07140.1 | Thale cress | cytosol | 69.81 | 64.91 |
| AT2G30060.1 | Thale cress | cytosol | 66.04 | 64.52 |
| PGSC0003DMT400021160 | Potato | cytosol | 66.98 | 63.39 |
| CDX84862 | Canola | cytosol | 65.57 | 62.9 |
| CDY24034 | Canola | cytosol | 63.68 | 62.79 |
| Bra022775.1-P | Field mustard | cytosol | 65.09 | 62.44 |
| CDY10250 | Canola | plastid | 60.85 | 52.44 |
Protein Annotations
| EntrezGene:102600448 | Gene3D:2.30.29.30 | MapMan:23.5.1.6 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0046907 | InterPro:IPR000156 | InterPro:IPR011993 | UniProt:M1BU59 |
| PFAM:PF00638 | EnsemblPlantsGene:PGSC0003DMG400020543 | PGSC:PGSC0003DMG400020543 | EnsemblPlants:PGSC0003DMT400052941 | InterPro:PH-like_dom_sf | PFscan:PS50196 |
| PANTHER:PTHR23138 | PANTHER:PTHR23138:SF107 | InterPro:Ran_bind_dom | SMART:SM00160 | SUPFAM:SSF50729 | UniParc:UPI000296D158 |
| RefSeq:XP_006344059.1 | SEG:seg | : | : | : | : |
Description
Ran binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020543]
Coordinates
chr6:-:3149966..3155136
Molecular Weight (calculated)
23721.6 Da
IEP (calculated)
4.580
GRAVY (calculated)
-0.900
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTEPKHEH REEEEEAAGA DDEDTGAQVA PIVRLEEVAV STGEENEDPL IDLKAKLYRF DKDGNQWKER GAGTVKLLKH KETGKVRLVM RQSKTLKICA
101: NHFVLPTMTV QEHAGNEKSC VWHAPDFADG ELKDELFCIR FASIENCKSF MDMFQEVAES QKKEESEDGS TAAGLLEKLS VEDKSQEKAK YKTEKGDGKE
201: EKAEDKDAEA TA
101: NHFVLPTMTV QEHAGNEKSC VWHAPDFADG ELKDELFCIR FASIENCKSF MDMFQEVAES QKKEESEDGS TAAGLLEKLS VEDKSQEKAK YKTEKGDGKE
201: EKAEDKDAEA TA
001: MATNEPEHEH RDEEEAGANE DEDTGAQVAP IVRLEEVAVT TGEEDEDAVL DLKSKLYRFD KDANQWKERG AGTVKFLKHK NTGKIRLVMR QSKTLKICAN
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST
Arabidopsis Description
RANBP1ARan-binding protein 1 homolog a [Source:UniProtKB/Swiss-Prot;Acc:Q9LMK7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.