Factsheet for Bra030675.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002926.1-P
Bra035562.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07140.1	Bra002926.1-P	AT5G55190.1	21798944
AT1G07140.1	Bra035562.1-P	AT5G55190.1	21798944
AT1G07140.1	Bra002926.1-P	AT5G55190.1	9025305
AT1G07140.1	Bra035562.1-P	AT5G55190.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15604	Canola	cytosol	97.77	97.77
CDX86496	Canola	cytosol	97.32	97.32
Bra015554.1-P	Field mustard	cytosol	88.84	90.45
Bra031555.1-P	Field mustard	cytosol	91.07	89.47
AT1G07140.1	Thale cress	cytosol	89.73	88.16
Bra022775.1-P	Field mustard	cytosol	79.02	80.09
Solyc06g082120.2.1	Tomato	extracellular	66.96	71.09
VIT_06s0004g06880.t01	Wine grape	cytosol	70.09	70.4
PGSC0003DMT400052941	Potato	cytosol	66.52	70.28
PGSC0003DMT400078073	Potato	cytosol	67.41	68.33
KRG91719	Soybean	endoplasmic reticulum	65.62	65.92
KRH35051	Soybean	endoplasmic reticulum	63.84	65.6
GSMUA_Achr7P22420_001	Banana	cytosol	59.38	64.88
Os03t0292800-01	Rice	plastid	58.04	62.2
GSMUA_Achr11P...	Banana	cytosol	57.14	61.84
GSMUA_Achr11P...	Banana	cytosol	57.14	60.09
TraesCS4D01G194600.1	Wheat	cytosol	54.91	59.71
EER92413	Sorghum	cytosol	55.36	59.33
Os05t0350600-01	Rice	cytosol, plasma membrane, plastid	58.04	59.09
TraesCS1A01G223800.1	Wheat	cytosol	58.48	59.01
TraesCS1B01G237100.1	Wheat	cytosol	58.48	59.01
TraesCS1D01G225400.1	Wheat	cytosol	58.48	59.01
GSMUA_Achr10P...	Banana	cytosol	55.36	58.77
TraesCS4A01G110400.1	Wheat	cytosol	54.02	58.45
HORVU1Hr1G059970.2	Barley	cytosol	57.14	58.45
TraesCS4B01G193600.1	Wheat	cytosol	53.57	57.97
EES19356	Sorghum	cytosol	57.14	57.92
Zm00001d010504_P001	Maize	extracellular	57.14	57.92
GSMUA_Achr9P04480_001	Banana	cytosol	54.91	55.66
Zm00001d028755_P001	Maize	cytosol	55.8	55.56
Zm00001d047727_P002	Maize	cytosol	55.36	54.87
Zm00001d037993_P001	Maize	cytosol	57.59	46.74
HORVU4Hr1G056140.3	Barley	plastid	54.02	43.84

Protein Annotations

Gene3D:2.30.29.30	MapMan:23.5.1.6	EnsemblPlantsGene:Bra030675	EnsemblPlants:Bra030675.1	EnsemblPlants:Bra030675.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0008150	GO:GO:0046907	InterPro:IPR000156
InterPro:IPR011993	UniProt:M4EPF5	PFAM:PF00638	InterPro:PH-like_dom_sf	PFscan:PS50196	PANTHER:PTHR23138
PANTHER:PTHR23138:SF107	InterPro:Ran_bind_dom	SMART:SM00160	SUPFAM:SSF50729	UniParc:UPI0002546F44	SEG:seg

Description

AT1G07140 (E=8e-082) SIRANBP | SIRANBP; Ran GTPase binding

Coordinates

chrA08:+:20850953..20852194

Molecular Weight (calculated)

25206.2 Da

IEP (calculated)

4.446

GRAVY (calculated)

-0.924

Length

224 amino acids

Sequence
(BLAST)

001: MATNEPEHEP RDVEEAGANE DEDTGAQVAP IVSLEEVAVT TGEEDEDAVL DLKSKLYRFD KEANQWKERG AGTVKLLKHK STGKIRLVMR QSKTLKICAN
101: HFVTQGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKAFM QKFNEVAESE VEKEESKDAS DTAGLLEKLT VEETKTEEKP VEKEKTEVEA
201: EEKKKSEPEK ADEEKKTEEA VPST

Best Arabidopsis Sequence Match ( AT1G07140.1 )
(BLAST)

001: MATNEPEHEH RDEEEAGANE DEDTGAQVAP IVRLEEVAVT TGEEDEDAVL DLKSKLYRFD KDANQWKERG AGTVKFLKHK NTGKIRLVMR QSKTLKICAN
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST

Arabidopsis Description

RANBP1ARan-binding protein 1 homolog a [Source:UniProtKB/Swiss-Prot;Acc:Q9LMK7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.