Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002926.1-P | |
| Bra035562.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G07140.1 | Bra002926.1-P | AT5G55190.1 | 21798944 |
| AT1G07140.1 | Bra035562.1-P | AT5G55190.1 | 21798944 |
| AT1G07140.1 | Bra002926.1-P | AT5G55190.1 | 9025305 |
| AT1G07140.1 | Bra035562.1-P | AT5G55190.1 | 9025305 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06679 | Canola | cytosol | 100.0 | 100.0 |
| Bra030675.1-P | Field mustard | cytosol | 90.45 | 88.84 |
| AT1G07140.1 | Thale cress | cytosol | 86.36 | 83.33 |
| Bra031555.1-P | Field mustard | cytosol | 85.91 | 82.89 |
| Bra022775.1-P | Field mustard | cytosol | 75.0 | 74.66 |
| Solyc06g082120.2.1 | Tomato | extracellular | 67.27 | 70.14 |
| PGSC0003DMT400052941 | Potato | cytosol | 67.27 | 69.81 |
| VIT_06s0004g06880.t01 | Wine grape | cytosol | 69.55 | 68.61 |
| PGSC0003DMT400078073 | Potato | cytosol | 67.73 | 67.42 |
| KRH35051 | Soybean | endoplasmic reticulum | 63.64 | 64.22 |
| KRG91719 | Soybean | endoplasmic reticulum | 64.55 | 63.68 |
| GSMUA_Achr7P22420_001 | Banana | cytosol | 58.64 | 62.93 |
| GSMUA_Achr11P... | Banana | cytosol | 58.18 | 61.84 |
| Os03t0292800-01 | Rice | plastid | 58.18 | 61.24 |
| TraesCS4D01G194600.1 | Wheat | cytosol | 56.36 | 60.19 |
| GSMUA_Achr11P... | Banana | cytosol | 58.18 | 60.09 |
| EER92413 | Sorghum | cytosol | 56.36 | 59.33 |
| TraesCS4A01G110400.1 | Wheat | cytosol | 55.45 | 58.94 |
| GSMUA_Achr10P... | Banana | cytosol | 56.36 | 58.77 |
| Os05t0350600-01 | Rice | cytosol, plasma membrane, plastid | 58.64 | 58.64 |
| TraesCS4B01G193600.1 | Wheat | cytosol | 55.0 | 58.45 |
| TraesCS1A01G223800.1 | Wheat | cytosol | 58.64 | 58.11 |
| TraesCS1B01G237100.1 | Wheat | cytosol | 58.64 | 58.11 |
| TraesCS1D01G225400.1 | Wheat | cytosol | 58.64 | 58.11 |
| HORVU1Hr1G059970.2 | Barley | cytosol | 57.27 | 57.53 |
| EES19356 | Sorghum | cytosol | 57.73 | 57.47 |
| Zm00001d010504_P001 | Maize | extracellular | 57.27 | 57.01 |
| GSMUA_Achr9P04480_001 | Banana | cytosol | 56.82 | 56.56 |
| Zm00001d028755_P001 | Maize | cytosol | 56.82 | 55.56 |
| Zm00001d047727_P002 | Maize | cytosol | 55.45 | 53.98 |
| Zm00001d037993_P001 | Maize | cytosol | 58.64 | 46.74 |
| HORVU4Hr1G056140.3 | Barley | plastid | 55.45 | 44.2 |
Protein Annotations
| Gene3D:2.30.29.30 | MapMan:23.5.1.6 | EnsemblPlantsGene:Bra015554 | EnsemblPlants:Bra015554.1 | EnsemblPlants:Bra015554.1-P | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0046907 | InterPro:IPR000156 |
| InterPro:IPR011993 | UniProt:M4DGD1 | PFAM:PF00638 | InterPro:PH-like_dom_sf | PFscan:PS50196 | PANTHER:PTHR23138 |
| PANTHER:PTHR23138:SF107 | InterPro:Ran_bind_dom | SMART:SM00160 | SUPFAM:SSF50729 | UniParc:UPI0002544D96 | SEG:seg |
Description
AT1G07140 (E=1e-072) SIRANBP | SIRANBP; Ran GTPase binding
Coordinates
chrA10:+:1089796..1091002
Molecular Weight (calculated)
24859.9 Da
IEP (calculated)
4.514
GRAVY (calculated)
-0.915
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MATNEPEHET RDAEEAGANE DEDTGAQIAP IVRLEEVAIT TGEEDEDAVL DLKSKLYRFD KEANQWKERG AGTVKLLKHK DTGKIRLVMR QSKTLRICAN
101: HFVKPGMAVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKLFM QKFNEVAESE VEKEESKDAS ETAGLLEKLT VEETKTEEKV KTEVEAEEKK
201: KSEPEKADEE KKTEEAAPST
101: HFVKPGMAVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKLFM QKFNEVAESE VEKEESKDAS ETAGLLEKLT VEETKTEEKV KTEVEAEEKK
201: KSEPEKADEE KKTEEAAPST
001: MATNEPEHEH RDEEEAGANE DEDTGAQVAP IVRLEEVAVT TGEEDEDAVL DLKSKLYRFD KDANQWKERG AGTVKFLKHK NTGKIRLVMR QSKTLKICAN
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST
Arabidopsis Description
RANBP1ARan-binding protein 1 homolog a [Source:UniProtKB/Swiss-Prot;Acc:Q9LMK7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.