Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G07140.1 | GSMUA_AchrUn_... | AT5G55190.1 | 21798944 |
| AT1G07140.1 | GSMUA_AchrUn_... | AT5G55190.1 | 9025305 |
| AT2G30060.1 | GSMUA_AchrUn_... | AT5G55190.1 | 9025305 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P22420_001 | Banana | cytosol | 85.02 | 85.85 |
| GSMUA_Achr10P... | Banana | cytosol | 81.16 | 79.62 |
| GSMUA_Achr11P... | Banana | cytosol | 81.16 | 78.87 |
| Os03t0292800-01 | Rice | plastid | 71.01 | 70.33 |
| EER92413 | Sorghum | cytosol | 69.08 | 68.42 |
| TraesCS4B01G193600.1 | Wheat | cytosol | 67.63 | 67.63 |
| TraesCS4A01G110400.1 | Wheat | cytosol | 67.63 | 67.63 |
| TraesCS4D01G194600.1 | Wheat | cytosol | 67.15 | 67.48 |
| GSMUA_Achr9P04480_001 | Banana | cytosol | 71.98 | 67.42 |
| CDX86501 | Canola | cytosol | 13.53 | 65.12 |
| Zm00001d028755_P001 | Maize | cytosol | 69.08 | 63.56 |
| Zm00001d047727_P002 | Maize | cytosol | 68.6 | 62.83 |
| VIT_04s0008g01410.t01 | Wine grape | cytosol | 64.25 | 60.45 |
| KRH35051 | Soybean | endoplasmic reticulum | 62.8 | 59.63 |
| CDY24034 | Canola | cytosol | 61.84 | 59.53 |
| Solyc08g062660.2.1 | Tomato | nucleus, plastid | 64.25 | 59.38 |
| KRH65697 | Soybean | cytosol | 57.0 | 59.3 |
| AT2G30060.1 | Thale cress | cytosol | 61.84 | 58.99 |
| PGSC0003DMT400021160 | Potato | cytosol | 63.77 | 58.93 |
| KRG91719 | Soybean | endoplasmic reticulum | 63.28 | 58.74 |
| Bra022775.1-P | Field mustard | cytosol | 62.32 | 58.37 |
| Bra015554.1-P | Field mustard | cytosol | 61.84 | 58.18 |
| CDY06679 | Canola | cytosol | 61.84 | 58.18 |
| KRH75945 | Soybean | cytosol | 64.25 | 58.08 |
| CDY15604 | Canola | cytosol | 62.8 | 58.04 |
| AT5G58590.1 | Thale cress | cytosol | 61.35 | 57.99 |
| CDY59068 | Canola | cytosol | 62.8 | 57.78 |
| CDX84862 | Canola | cytosol | 61.35 | 57.47 |
| CDY09935 | Canola | cytosol | 62.32 | 57.33 |
| Bra030675.1-P | Field mustard | cytosol | 61.84 | 57.14 |
| CDX86496 | Canola | cytosol | 61.84 | 57.14 |
| Bra031555.1-P | Field mustard | cytosol | 62.32 | 56.58 |
| AT1G07140.1 | Thale cress | cytosol | 60.39 | 54.82 |
| HORVU4Hr1G056140.3 | Barley | plastid | 68.12 | 51.09 |
| CDX80354 | Canola | cytosol | 21.26 | 49.44 |
| CDY10250 | Canola | plastid | 53.62 | 45.12 |
Protein Annotations
| Gene3D:2.30.29.30 | MapMan:23.5.1.6 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0046907 | EnsemblPlantsGene:GSMUA_Achr11G08420_001 | EnsemblPlants:GSMUA_Achr11P08420_001 | EnsemblPlants:GSMUA_Achr11T08420_001 | InterPro:IPR000156 |
| InterPro:IPR011993 | UniProt:M0RQH2 | PFAM:PF00638 | InterPro:PH-like_dom_sf | PFscan:PS50196 | PANTHER:PTHR23138 |
| PANTHER:PTHR23138:SF107 | InterPro:Ran_bind_dom | SMART:SM00160 | SUPFAM:SSF50729 | UniParc:UPI0002960C43 | SEG:seg |
Description
Ran-binding protein 1 homolog c [Source:GMGC_GENE;Acc:GSMUA_Achr11G08420_001]
Coordinates
chr11:-:6500354..6503616
Molecular Weight (calculated)
22718.5 Da
IEP (calculated)
4.450
GRAVY (calculated)
-0.629
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNDPDREE EAVAGEDEDT GAQIAPIVTL SEVAVTTGEE EEDALLDLKA KLYRFDKEGN QWKERGTGSV KLLKHRETGK VRLVMRQAKT LKICANHLVI
101: PSIKIQEHAG NDKSCVWHAS DFADGELKEE MFCIRFGSVE NCKKFMETVE SITETLGKSE EKESEDASAA AGLLEKLSVA ESKTEKASEE APATSVKAEE
201: SSEVEKP
101: PSIKIQEHAG NDKSCVWHAS DFADGELKEE MFCIRFGSVE NCKKFMETVE SITETLGKSE EKESEDASAA AGLLEKLSVA ESKTEKASEE APATSVKAEE
201: SSEVEKP
001: MATNEPEHEH RDEEEAGANE DEDTGAQVAP IVRLEEVAVT TGEEDEDAVL DLKSKLYRFD KDANQWKERG AGTVKFLKHK NTGKIRLVMR QSKTLKICAN
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST
Arabidopsis Description
RANBP1ARan-binding protein 1 homolog a [Source:UniProtKB/Swiss-Prot;Acc:Q9LMK7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.