Factsheet for Solyc08g062660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021160	Potato	cytosol	96.43	96.43
Solyc06g082120.2.1	Tomato	extracellular	62.95	66.82
Os03t0292800-01	Rice	plastid	61.16	65.55
VIT_04s0008g01410.t01	Wine grape	cytosol	63.84	65.0
GSMUA_Achr7P22420_001	Banana	cytosol	59.38	64.88
GSMUA_Achr11P...	Banana	cytosol	59.38	64.25
EER92413	Sorghum	cytosol	58.93	63.16
GSMUA_Achr11P...	Banana	cytosol	58.48	61.5
GSMUA_Achr10P...	Banana	cytosol	57.59	61.14
TraesCS4A01G110400.1	Wheat	cytosol	56.25	60.87
TraesCS4D01G194600.1	Wheat	cytosol	55.8	60.68
TraesCS4B01G193600.1	Wheat	cytosol	55.8	60.39
TraesCS1A01G223800.1	Wheat	cytosol	58.93	59.46
TraesCS1D01G225400.1	Wheat	cytosol	58.93	59.46
HORVU1Hr1G059970.2	Barley	cytosol	58.04	59.36
Zm00001d028755_P001	Maize	cytosol	59.38	59.11
Os05t0350600-01	Rice	cytosol, plasma membrane, plastid	58.04	59.09
TraesCS1B01G237100.1	Wheat	cytosol	58.48	59.01
Zm00001d047727_P002	Maize	cytosol	58.93	58.41
Zm00001d010504_P001	Maize	extracellular	56.7	57.47
EES19356	Sorghum	cytosol	56.25	57.01
GSMUA_Achr9P04480_001	Banana	cytosol	54.46	55.2
HORVU4Hr1G056140.3	Barley	plastid	56.25	45.65
Zm00001d037993_P001	Maize	cytosol	55.8	45.29

Protein Annotations

Gene3D:2.30.29.30	MapMan:23.5.1.6	EMBL:AF370443	ncoils:Coil	GO:GO:0000082	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006405	GO:GO:0006511	GO:GO:0006606	GO:GO:0006810
GO:GO:0007049	GO:GO:0007051	GO:GO:0008150	GO:GO:0008152	GO:GO:0008536	GO:GO:0009056
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0030234	GO:GO:0043547	GO:GO:0046907
InterPro:IPR000156	InterPro:IPR011993	PFAM:PF00638	InterPro:PH-like_dom_sf	PFscan:PS50196	PANTHER:PTHR23138
PANTHER:PTHR23138:SF107	UniProt:Q94K24	InterPro:Ran_bind_dom	SMART:SM00160	SUPFAM:SSF50729	EnsemblPlantsGene:Solyc08g062660.2
EnsemblPlants:Solyc08g062660.2.1	UniParc:UPI00000A40DB	SEG:seg	:	:	:

Description

Ran binding protein-1 [Source:UniProtKB/TrEMBL;Acc:Q94K24]

Coordinates

chr8:+:51693869..51696828

Molecular Weight (calculated)

25017.1 Da

IEP (calculated)

4.583

GRAVY (calculated)

-0.912

Length

224 amino acids

Sequence
(BLAST)

001: MASTTVEPKL EKKEEEVEAE VEENPTGDDE DTGAQVAPIV RLQEVAVSTG EENEHVLLDL KSKLYRFDKE GSQWKERGVG TVKLLKHKET GKVRLVMRQS
101: KTLKICANHL VLPTMSIQEH AGNEKSCVWH AADFADGELK DETFCIRFAS VENCKAFKEK VEEIAESQQT KSGQSEEAGA AATELIEKLS VESKDKNDKP
201: EDKEAPAATE EKEDKKEEKA EEKN

Best Arabidopsis Sequence Match ( AT5G58590.1 )
(BLAST)

001: MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST

Arabidopsis Description

RANBP1CAt5g58590 [Source:UniProtKB/TrEMBL;Acc:Q1WWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.