Factsheet for Os05t0350600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0611100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07140.1	Os01t0611100-01	AT5G20010.1	9025305
AT1G07140.1	Os01t0611100-01	AT5G20020.1	9025305
AT1G07140.1	Os01t0611100-01	AT5G55190.1	21798944
AT1G07140.1	Os01t0611100-01	AT5G55190.1	9025305
AT2G30060.1	Os01t0611100-01	AT5G20010.1	9025305
AT2G30060.1	Os01t0611100-01	AT5G20020.1	9025305
AT2G30060.1	Os01t0611100-01	AT5G55190.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G225400.1	Wheat	cytosol	85.0	84.23
TraesCS1B01G237100.1	Wheat	cytosol	85.0	84.23
TraesCS1A01G223800.1	Wheat	cytosol	85.0	84.23
EES19356	Sorghum	cytosol	81.82	81.45
Zm00001d010504_P001	Maize	extracellular	80.91	80.54
HORVU1Hr1G059970.2	Barley	cytosol	80.0	80.37
Os03t0292800-01	Rice	plastid	70.91	74.64
GSMUA_Achr9P04480_001	Banana	cytosol	67.27	66.97
Zm00001d037993_P001	Maize	cytosol	79.09	63.04
CDY24034	Canola	cytosol	59.55	60.93
CDX86501	Canola	cytosol	11.82	60.47
VIT_04s0008g01410.t01	Wine grape	cytosol	60.0	60.0
AT2G30060.1	Thale cress	cytosol	59.09	59.91
CDX84862	Canola	cytosol	59.09	58.82
Bra022775.1-P	Field mustard	cytosol	59.09	58.82
CDY09935	Canola	cytosol	60.0	58.67
CDY59068	Canola	cytosol	60.0	58.67
CDY06679	Canola	cytosol	58.64	58.64
Bra015554.1-P	Field mustard	cytosol	58.64	58.64
CDY15604	Canola	cytosol	59.55	58.48
CDX86496	Canola	cytosol	59.55	58.48
KRH35051	Soybean	endoplasmic reticulum	57.73	58.26
Bra030675.1-P	Field mustard	cytosol	59.09	58.04
Solyc08g062660.2.1	Tomato	nucleus, plastid	59.09	58.04
AT5G58590.1	Thale cress	cytosol	57.73	57.99
PGSC0003DMT400021160	Potato	cytosol	58.64	57.59
KRH75945	Soybean	cytosol	59.55	57.21
Bra031555.1-P	Field mustard	cytosol	59.09	57.02
KRG91719	Soybean	endoplasmic reticulum	56.82	56.05
AT1G07140.1	Thale cress	cytosol	57.27	55.26
KRH65697	Soybean	cytosol	49.55	54.77
CDX80354	Canola	cytosol	20.0	49.44
CDY10250	Canola	plastid	52.27	46.75

Protein Annotations

Gene3D:2.30.29.30	MapMan:23.5.1.6	EntrezGene:4338501	ProteinID:BAF17189.1	ProteinID:BAS93532.1	GO:GO:0000082
GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006405	GO:GO:0006511	GO:GO:0006606
GO:GO:0006810	GO:GO:0007049	GO:GO:0007051	GO:GO:0008150	GO:GO:0008152	GO:GO:0008536
GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0030234	GO:GO:0043547
GO:GO:0046907	InterPro:IPR000156	InterPro:IPR011993	EnsemblPlantsGene:Os05g0350600	EnsemblPlants:Os05t0350600-01	PFAM:PF00638
InterPro:PH-like_dom_sf	PFscan:PS50196	PANTHER:PTHR23138	PANTHER:PTHR23138:SF105	UniProt:Q0DIY4	InterPro:Ran_bind_dom
SMART:SM00160	SUPFAM:SSF50729	UniParc:UPI0000E1246A	RefSeq:XP_015640665.1	SEG:seg	:

Description

Similar to Atranbp1b protein. (Os05t0350600-01);Similar to ran-binding protein 1. (Os05t0350600-02)

Coordinates

chr5:+:16559837..16562519

Molecular Weight (calculated)

24084.0 Da

IEP (calculated)

4.433

GRAVY (calculated)

-0.717

Length

220 amino acids

Sequence
(BLAST)

001: MADKEPVVDR PEDEEEASAA AAAAGGEEED TGAQVAPIVR LEEVAVTTGE EDEDVLLDMK AKLYRFDKEG NQWKERGTGT VKLLKHKENG KVRLVMRQAK
101: TLKICANHLV ASTTKMQEHA GSDKSCVWHA ADFADGELKE EMFAIRFGSV ENCKKFKDLV EEISESLAKT EGKETEEDSS AAGLLEKLSV TEKKSEEVAT
201: KEESTEAVKE TDTKSAATSE

Best Arabidopsis Sequence Match ( AT5G58590.1 )
(BLAST)

001: MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST

Arabidopsis Description

RANBP1CAt5g58590 [Source:UniProtKB/TrEMBL;Acc:Q1WWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.