Factsheet for VIT_04s0008g01410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0292800-01	Rice	plastid	62.73	66.03
PGSC0003DMT400021160	Potato	cytosol	66.36	65.18
GSMUA_Achr11P...	Banana	cytosol	60.45	64.25
GSMUA_Achr7P22420_001	Banana	cytosol	59.55	63.9
Solyc08g062660.2.1	Tomato	nucleus, plastid	65.0	63.84
EER92413	Sorghum	cytosol	60.45	63.64
GSMUA_Achr10P...	Banana	cytosol	60.91	63.51
TraesCS4A01G110400.1	Wheat	cytosol	58.64	62.32
TraesCS4D01G194600.1	Wheat	cytosol	58.18	62.14
GSMUA_Achr11P...	Banana	cytosol	60.0	61.97
VIT_06s0004g06880.t01	Wine grape	cytosol	62.73	61.88
TraesCS4B01G193600.1	Wheat	cytosol	58.18	61.84
VIT_08s0217g00030.t01	Wine grape	cytosol	61.82	61.54
GSMUA_Achr9P04480_001	Banana	cytosol	60.45	60.18
Os05t0350600-01	Rice	cytosol, plasma membrane, plastid	60.0	60.0
HORVU1Hr1G059970.2	Barley	cytosol	59.55	59.82
EES19356	Sorghum	cytosol	59.09	58.82
Zm00001d047727_P002	Maize	cytosol	60.0	58.41
Zm00001d028755_P001	Maize	cytosol	59.55	58.22
TraesCS1D01G225400.1	Wheat	cytosol	58.64	58.11
TraesCS1B01G237100.1	Wheat	cytosol	58.64	58.11
TraesCS1A01G223800.1	Wheat	cytosol	58.64	58.11
Zm00001d010504_P001	Maize	extracellular	58.18	57.92
HORVU4Hr1G056140.3	Barley	plastid	58.64	46.74
Zm00001d037993_P001	Maize	cytosol	57.73	46.01

Protein Annotations

EntrezGene:100247393	wikigene:100247393	Gene3D:2.30.29.30	MapMan:23.5.1.6	ProteinID:CBI20678	ProteinID:CBI20678.3
ncoils:Coil	UniProt:D7STS9	EMBL:FN595231	GO:GO:0000082	GO:GO:0003674	GO:GO:0005096
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006405	GO:GO:0006511	GO:GO:0006606	GO:GO:0006810	GO:GO:0007049
GO:GO:0007051	GO:GO:0008150	GO:GO:0008152	GO:GO:0008536	GO:GO:0009056	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0030234	GO:GO:0043547	GO:GO:0046907	InterPro:IPR000156
InterPro:IPR011993	EntrezGene:LOC100247393	wikigene:LOC100247393	PFAM:PF00638	InterPro:PH-like_dom_sf	PFscan:PS50196
PANTHER:PTHR23138	PANTHER:PTHR23138:SF107	InterPro:Ran_bind_dom	SMART:SM00160	SUPFAM:SSF50729	TIGR:TC52534
TIGR:TC55152	UniParc:UPI00015C8C79	ArrayExpress:VIT_04s0008g01410	EnsemblPlantsGene:VIT_04s0008g01410	EnsemblPlants:VIT_04s0008g01410.t01	unigene:Vvi.7614
RefSeq:XP_002280173	RefSeq:XP_002280173.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:1166980..1170817

Molecular Weight (calculated)

24581.3 Da

IEP (calculated)

4.418

GRAVY (calculated)

-0.910

Length

220 amino acids

Sequence
(BLAST)

001: MSSTEQPEHR KQEAEEETTG GAADDEDTGA EVAPIVKLQE VAVTTGEEDE TVLLDLKCKL YRFDKEGNQW KERGVGTVKL LKHKETEKVR LVMRQSKTLK
101: ICANHLVLAS TSVQEHTGND KSCVWHATDF SDGELKEELF CIRFASVENC KTFREKIEEI AESLEKKAEE SEETKSATDL LEKLNVGESK DEEGTKEAAS
201: ASAEVEKDDS AQQEKPESDK

Best Arabidopsis Sequence Match ( AT5G58590.1 )
(BLAST)

001: MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST

Arabidopsis Description

RANBP1CAt5g58590 [Source:UniProtKB/TrEMBL;Acc:Q1WWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.