CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01060
KXG22580
KXG32999

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07140.1	EES01060	AT5G20010.1	9025305
AT1G07140.1	KXG22580	AT5G20010.1	9025305
AT1G07140.1	KXG32999	AT5G20010.1	9025305
AT1G07140.1	EES01060	AT5G20020.1	9025305
AT1G07140.1	KXG22580	AT5G20020.1	9025305
AT1G07140.1	KXG32999	AT5G20020.1	9025305
AT1G07140.1	EES01060	AT5G55190.1	21798944
AT1G07140.1	KXG22580	AT5G55190.1	21798944
AT1G07140.1	KXG32999	AT5G55190.1	21798944
AT1G07140.1	EES01060	AT5G55190.1	9025305
AT1G07140.1	KXG22580	AT5G55190.1	9025305
AT1G07140.1	KXG32999	AT5G55190.1	9025305
AT2G30060.1	EES01060	AT5G20010.1	9025305
AT2G30060.1	KXG22580	AT5G20010.1	9025305
AT2G30060.1	KXG32999	AT5G20010.1	9025305
AT2G30060.1	EES01060	AT5G20020.1	9025305
AT2G30060.1	KXG22580	AT5G20020.1	9025305
AT2G30060.1	KXG32999	AT5G20020.1	9025305
AT2G30060.1	EES01060	AT5G55190.1	9025305
AT2G30060.1	KXG22580	AT5G55190.1	9025305
AT2G30060.1	KXG32999	AT5G55190.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0292800-01	Rice	plastid	86.12	86.12
Zm00001d047727_P002	Maize	cytosol	90.91	84.07
Zm00001d028755_P001	Maize	cytosol	90.43	84.0
TraesCS4A01G110400.1	Wheat	cytosol	80.38	81.16
TraesCS4B01G193600.1	Wheat	cytosol	79.9	80.68
TraesCS4D01G194600.1	Wheat	cytosol	78.47	79.61
GSMUA_Achr11P...	Banana	cytosol	68.42	69.08
GSMUA_Achr7P22420_001	Banana	cytosol	66.99	68.29
EES19356	Sorghum	cytosol	71.77	67.87
GSMUA_Achr11P...	Banana	cytosol	65.07	63.85
GSMUA_Achr10P...	Banana	cytosol	64.11	63.51
VIT_04s0008g01410.t01	Wine grape	cytosol	63.64	60.45
HORVU4Hr1G056140.3	Barley	plastid	79.43	60.14
Solyc08g062660.2.1	Tomato	nucleus, plastid	63.16	58.93
PGSC0003DMT400021160	Potato	cytosol	62.68	58.48
CDX86501	Canola	cytosol	11.96	58.14
CDX84862	Canola	cytosol	61.24	57.92
Bra022775.1-P	Field mustard	cytosol	60.77	57.47
KRH35051	Soybean	endoplasmic reticulum	59.81	57.34
KRG91719	Soybean	endoplasmic reticulum	60.77	56.95
CDY06679	Canola	cytosol	59.33	56.36
Bra015554.1-P	Field mustard	cytosol	59.33	56.36
KRH65697	Soybean	cytosol	53.59	56.28
CDY24034	Canola	cytosol	57.89	56.28
AT2G30060.1	Thale cress	cytosol	58.37	56.22
CDY09935	Canola	cytosol	60.29	56.0
CDX86496	Canola	cytosol	59.33	55.36
Bra030675.1-P	Field mustard	cytosol	59.33	55.36
CDY15604	Canola	cytosol	59.33	55.36
Bra031555.1-P	Field mustard	cytosol	60.29	55.26
CDY59068	Canola	cytosol	59.33	55.11
KRH75945	Soybean	cytosol	59.81	54.59
AT5G58590.1	Thale cress	cytosol	56.94	54.34
AT1G07140.1	Thale cress	cytosol	58.85	53.95
CDX80354	Canola	cytosol	20.1	47.19
CDY10250	Canola	plastid	50.72	43.09

Protein Annotations

Gene3D:2.30.29.30	MapMan:23.5.1.6	EntrezGene:8081427	UniProt:C5WNI3	ncoils:Coil	EnsemblPlants:EER92413
ProteinID:EER92413	ProteinID:EER92413.1	GO:GO:0000082	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006405	GO:GO:0006511	GO:GO:0006606	GO:GO:0006810	GO:GO:0007049	GO:GO:0007051
GO:GO:0008150	GO:GO:0008152	GO:GO:0008536	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0030234	GO:GO:0043547	GO:GO:0046907	InterPro:IPR000156	InterPro:IPR011993
PFAM:PF00638	InterPro:PH-like_dom_sf	PFscan:PS50196	PANTHER:PTHR23138	PANTHER:PTHR23138:SF105	InterPro:Ran_bind_dom
SMART:SM00160	EnsemblPlantsGene:SORBI_3001G405900	SUPFAM:SSF50729	unigene:Sbi.14464	UniParc:UPI0001A82C03	RefSeq:XP_002465415.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:69037776..69040791

Molecular Weight (calculated)

23237.0 Da

IEP (calculated)

4.364

GRAVY (calculated)

-0.797

Length

209 amino acids

Sequence
(BLAST)

001: MADPAEHRPA EEEEEAAAAG EDEDTGAQVA PIVKLEEVAV TTGEEDEDVL LDMKAKLYRF DKDGNQWKER GTGTVKLLKH KETAKVRLVM RQAKTLKICA
101: NHLVVATTKM QEHAGSDKSC VWHALDFAEG ELKEEMFAIR FGSVENCKKF KDIVEEIAEQ QGNTEEKENE EASTAADLVE KLTVTEASKE ETVEKEEAPA
201: SDDKKDAKE

Best Arabidopsis Sequence Match ( AT5G58590.1 )
(BLAST)

001: MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST

Arabidopsis Description

RANBP1CAt5g58590 [Source:UniProtKB/TrEMBL;Acc:Q1WWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.