Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7B01G254000.2 | |
| TraesCS7D01G155200.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G110400.1 | Wheat | cytosol | 99.03 | 99.03 |
| TraesCS4D01G194600.1 | Wheat | cytosol | 95.65 | 96.12 |
| EER92413 | Sorghum | cytosol | 80.68 | 79.9 |
| Os03t0292800-01 | Rice | plastid | 79.71 | 78.95 |
| HORVU4Hr1G056140.3 | Barley | plastid | 96.62 | 72.46 |
| Zm00001d047727_P002 | Maize | cytosol | 77.29 | 70.8 |
| Zm00001d028755_P001 | Maize | cytosol | 76.33 | 70.22 |
| TraesCS1B01G237100.1 | Wheat | cytosol | 73.91 | 68.92 |
| GSMUA_Achr11P... | Banana | cytosol | 67.63 | 67.63 |
| GSMUA_Achr11P... | Banana | cytosol | 67.63 | 65.73 |
| GSMUA_Achr7P22420_001 | Banana | cytosol | 64.73 | 65.37 |
| GSMUA_Achr10P... | Banana | cytosol | 65.7 | 64.45 |
| VIT_04s0008g01410.t01 | Wine grape | cytosol | 61.84 | 58.18 |
| CDX86501 | Canola | cytosol | 12.08 | 58.14 |
| KRH35051 | Soybean | endoplasmic reticulum | 60.39 | 57.34 |
| KRG91719 | Soybean | endoplasmic reticulum | 61.35 | 56.95 |
| CDY24034 | Canola | cytosol | 58.94 | 56.74 |
| AT2G30060.1 | Thale cress | cytosol | 59.42 | 56.68 |
| CDX84862 | Canola | cytosol | 60.39 | 56.56 |
| Bra022775.1-P | Field mustard | cytosol | 59.9 | 56.11 |
| Solyc08g062660.2.1 | Tomato | nucleus, plastid | 60.39 | 55.8 |
| PGSC0003DMT400021160 | Potato | cytosol | 59.9 | 55.36 |
| CDY06679 | Canola | cytosol | 58.45 | 55.0 |
| Bra015554.1-P | Field mustard | cytosol | 58.45 | 55.0 |
| KRH65697 | Soybean | cytosol | 52.17 | 54.27 |
| CDY59068 | Canola | cytosol | 58.94 | 54.22 |
| CDX86496 | Canola | cytosol | 58.45 | 54.02 |
| CDY15604 | Canola | cytosol | 58.45 | 54.02 |
| CDY09935 | Canola | cytosol | 58.45 | 53.78 |
| Bra030675.1-P | Field mustard | cytosol | 57.97 | 53.57 |
| Bra031555.1-P | Field mustard | cytosol | 58.94 | 53.51 |
| AT5G58590.1 | Thale cress | cytosol | 56.52 | 53.42 |
| AT1G07140.1 | Thale cress | cytosol | 58.45 | 53.07 |
| KRH75945 | Soybean | cytosol | 58.45 | 52.84 |
| CDX80354 | Canola | cytosol | 20.29 | 47.19 |
| CDY10250 | Canola | plastid | 49.76 | 41.87 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G193600.1 | EnsemblPlantsGene:TraesCS4B01G193600 | Gene3D:2.30.29.30 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0046907 |
| InterPro:IPR000156 | InterPro:IPR011993 | InterPro:PH-like_dom_sf | InterPro:Ran_bind_dom | ncoils:Coil | PANTHER:PTHR23138 |
| PANTHER:PTHR23138:SF105 | PFAM:PF00638 | PFscan:PS50196 | SEG:seg | SMART:SM00160 | SUPFAM:SSF50729 |
| TIGR:cd13179 | MapMan:23.5.1.6 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:416540262..416542861
Molecular Weight (calculated)
23125.0 Da
IEP (calculated)
4.398
GRAVY (calculated)
-0.768
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPAEHREE EEEAAAAGEE EDTGAQIAPI VKLEEVAITT GEEDEDVLLD MKAKLYRFDK DGGQWKERGT GAVKLLKHKE TAKVRLVMRQ AKTLKICANH
101: LVVATTKMQE HAGSDKSCVW HALDFADCEL KEEMFAIRFG SVENCKKFKD LVDDIAEQQG KNEEKESEEV SSAAELVEKL TVTEGKKEEQ TEKVETPAVD
201: DKKDAEE
101: LVVATTKMQE HAGSDKSCVW HALDFADCEL KEEMFAIRFG SVENCKKFKD LVDDIAEQQG KNEEKESEEV SSAAELVEKL TVTEGKKEEQ TEKVETPAVD
201: DKKDAEE
001: MATNEPEHEH RDEEEAGANE DEDTGAQVAP IVRLEEVAVT TGEEDEDAVL DLKSKLYRFD KDANQWKERG AGTVKFLKHK NTGKIRLVMR QSKTLKICAN
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST
Arabidopsis Description
RANBP1ARan-binding protein 1 homolog a [Source:UniProtKB/Swiss-Prot;Acc:Q9LMK7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.