Factsheet for TraesCS1B01G237100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7B01G254000.2
TraesCS7D01G155200.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07140.1	TraesCS7B01G254000.2	AT5G20010.1	9025305
AT1G07140.1	TraesCS7D01G155200.2	AT5G20010.1	9025305
AT1G07140.1	TraesCS7B01G254000.2	AT5G20020.1	9025305
AT1G07140.1	TraesCS7D01G155200.2	AT5G20020.1	9025305
AT1G07140.1	TraesCS7B01G254000.2	AT5G55190.1	21798944
AT1G07140.1	TraesCS7D01G155200.2	AT5G55190.1	21798944
AT1G07140.1	TraesCS7B01G254000.2	AT5G55190.1	9025305
AT1G07140.1	TraesCS7D01G155200.2	AT5G55190.1	9025305
AT2G30060.1	TraesCS7B01G254000.2	AT5G20010.1	9025305
AT2G30060.1	TraesCS7D01G155200.2	AT5G20010.1	9025305
AT2G30060.1	TraesCS7B01G254000.2	AT5G20020.1	9025305
AT2G30060.1	TraesCS7D01G155200.2	AT5G20020.1	9025305
AT2G30060.1	TraesCS7B01G254000.2	AT5G55190.1	9025305
AT2G30060.1	TraesCS7D01G155200.2	AT5G55190.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G225400.1	Wheat	cytosol	99.55	99.55
TraesCS1A01G223800.1	Wheat	cytosol	99.55	99.55
HORVU1Hr1G059970.2	Barley	cytosol	89.64	90.87
Os05t0350600-01	Rice	cytosol, plasma membrane, plastid	84.23	85.0
Zm00001d010504_P001	Maize	extracellular	81.98	82.35
EES19356	Sorghum	cytosol	81.53	81.9
TraesCS4B01G193600.1	Wheat	cytosol	68.92	73.91
GSMUA_Achr9P04480_001	Banana	cytosol	66.67	66.97
Zm00001d037993_P001	Maize	cytosol	79.28	63.77
CDY24034	Canola	cytosol	59.01	60.93
CDX86501	Canola	cytosol	11.71	60.47
CDY59068	Canola	cytosol	60.81	60.0
CDY09935	Canola	cytosol	60.36	59.56
AT2G30060.1	Thale cress	cytosol	57.66	58.99
CDX86496	Canola	cytosol	59.46	58.93
AT5G58590.1	Thale cress	cytosol	58.11	58.9
CDX84862	Canola	cytosol	58.56	58.82
VIT_04s0008g01410.t01	Wine grape	cytosol	58.11	58.64
Bra015554.1-P	Field mustard	cytosol	58.11	58.64
CDY06679	Canola	cytosol	58.11	58.64
Solyc08g062660.2.1	Tomato	nucleus, plastid	59.01	58.48
Bra030675.1-P	Field mustard	cytosol	59.01	58.48
CDY15604	Canola	cytosol	59.01	58.48
Bra022775.1-P	Field mustard	cytosol	58.11	58.37
Bra031555.1-P	Field mustard	cytosol	59.91	58.33
KRH35051	Soybean	endoplasmic reticulum	57.21	58.26
PGSC0003DMT400021160	Potato	cytosol	58.11	57.59
AT1G07140.1	Thale cress	cytosol	58.11	56.58
KRG91719	Soybean	endoplasmic reticulum	56.76	56.5
KRH75945	Soybean	cytosol	58.11	56.33
KRH65697	Soybean	cytosol	49.1	54.77
CDX80354	Canola	cytosol	20.27	50.56
CDY10250	Canola	plastid	51.35	46.34

Protein Annotations

EnsemblPlants:TraesCS1B01G237100.1	EnsemblPlantsGene:TraesCS1B01G237100	Gene3D:2.30.29.30	GO:GO:0006810	GO:GO:0008150	GO:GO:0046907
InterPro:IPR000156	InterPro:IPR011993	InterPro:PH-like_dom_sf	InterPro:Ran_bind_dom	PANTHER:PTHR23138	PANTHER:PTHR23138:SF105
PFAM:PF00638	PFscan:PS50196	SEG:seg	SMART:SM00160	SUPFAM:SSF50729	TIGR:cd13179
MapMan:23.5.1.6	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:424076152..424078733

Molecular Weight (calculated)

24062.9 Da

IEP (calculated)

4.376

GRAVY (calculated)

-0.682

Length

222 amino acids

Sequence
(BLAST)

001: MADKEPVVER PVAEEEGEDS AAAAAAGEEE DTGAQVAPIV RLEEVAVTTG EEDEDSLLDM KAKLYRFDKD GNQWKERGTG TVKLLKHKEN GKVRLVMRQA
101: KTLKICANHL VISTTKMQEH AGSDKSCVWH AADFADGELK DEMFAIRFGT VENCKKFKDL VDEIAESLAK NEGGESEEGS SAAGLLEKLS VSESKPEESA
201: AKEESTDASK ETETKVATAP SE

Best Arabidopsis Sequence Match ( AT5G58590.1 )
(BLAST)

001: MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST

Arabidopsis Description

RANBP1CAt5g58590 [Source:UniProtKB/TrEMBL;Acc:Q1WWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.