Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G030130.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G07140.1 | HORVU0Hr1G030130.1 | AT5G55190.1 | 21798944 |
| AT1G07140.1 | HORVU0Hr1G030130.1 | AT5G55190.1 | 9025305 |
| AT2G30060.1 | HORVU0Hr1G030130.1 | AT5G55190.1 | 9025305 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G225400.1 | Wheat | cytosol | 90.87 | 89.64 |
| TraesCS1B01G237100.1 | Wheat | cytosol | 90.87 | 89.64 |
| TraesCS1A01G223800.1 | Wheat | cytosol | 90.87 | 89.64 |
| Os05t0350600-01 | Rice | cytosol, plasma membrane, plastid | 80.37 | 80.0 |
| Zm00001d010504_P001 | Maize | extracellular | 76.71 | 76.02 |
| EES19356 | Sorghum | cytosol | 76.71 | 76.02 |
| GSMUA_Achr9P04480_001 | Banana | cytosol | 66.67 | 66.06 |
| CDX86501 | Canola | cytosol | 11.87 | 60.47 |
| CDY24034 | Canola | cytosol | 58.9 | 60.0 |
| VIT_04s0008g01410.t01 | Wine grape | cytosol | 59.82 | 59.55 |
| Zm00001d037993_P001 | Maize | cytosol | 74.89 | 59.42 |
| KRH35051 | Soybean | endoplasmic reticulum | 58.9 | 59.17 |
| AT5G58590.1 | Thale cress | cytosol | 58.9 | 58.9 |
| KRG91719 | Soybean | endoplasmic reticulum | 59.82 | 58.74 |
| AT2G30060.1 | Thale cress | cytosol | 57.99 | 58.53 |
| CDX84862 | Canola | cytosol | 58.9 | 58.37 |
| Solyc08g062660.2.1 | Tomato | nucleus, plastid | 59.36 | 58.04 |
| Bra022775.1-P | Field mustard | cytosol | 58.45 | 57.92 |
| PGSC0003DMT400021160 | Potato | cytosol | 58.9 | 57.59 |
| CDX86496 | Canola | cytosol | 58.9 | 57.59 |
| CDY59068 | Canola | cytosol | 58.9 | 57.33 |
| CDY09935 | Canola | cytosol | 58.9 | 57.33 |
| CDY06679 | Canola | cytosol | 57.53 | 57.27 |
| Bra015554.1-P | Field mustard | cytosol | 57.53 | 57.27 |
| Bra030675.1-P | Field mustard | cytosol | 58.45 | 57.14 |
| CDY15604 | Canola | cytosol | 58.45 | 57.14 |
| HORVU4Hr1G056140.3 | Barley | plastid | 71.69 | 56.88 |
| AT1G07140.1 | Thale cress | cytosol | 58.9 | 56.58 |
| KRH65697 | Soybean | cytosol | 51.14 | 56.28 |
| Bra031555.1-P | Field mustard | cytosol | 57.99 | 55.7 |
| KRH75945 | Soybean | cytosol | 57.99 | 55.46 |
| CDX80354 | Canola | cytosol | 20.55 | 50.56 |
| CDY10250 | Canola | plastid | 50.68 | 45.12 |
Protein Annotations
| Gene3D:2.30.29.30 | MapMan:23.5.1.6 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0046907 | EnsemblPlantsGene:HORVU1Hr1G059970 | EnsemblPlants:HORVU1Hr1G059970.2 | InterPro:IPR000156 | InterPro:IPR011993 |
| UniProt:M0ZCE0 | PFAM:PF00638 | InterPro:PH-like_dom_sf | PFscan:PS50196 | PANTHER:PTHR23138 | PANTHER:PTHR23138:SF105 |
| InterPro:Ran_bind_dom | SMART:SM00160 | SUPFAM:SSF50729 | UniParc:UPI000296ADFD | SEG:seg | : |
Description
No Description!
Coordinates
chrchr1H:-:435643992..435647328
Molecular Weight (calculated)
23775.6 Da
IEP (calculated)
4.402
GRAVY (calculated)
-0.680
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKEPVVER PVAEEEGEDS AAAAAAGEEE DTGAQVAPIV RLEEVAVTTG EEDEDSLLDM KAKLYRFDKD GNQWKERGTG TVKLLKHKEN GKVRLVMRQA
101: KTLKICANHL VISTTKMQEH AGSDKSCVWH AADFADGELK DEMFAIRFGT VENCKKFKDL VDEIAESLAK DEGGESVEGS SAAGLLEKLS VNESKPEESA
201: AKEESSKETE TKAATTPSE
101: KTLKICANHL VISTTKMQEH AGSDKSCVWH AADFADGELK DEMFAIRFGT VENCKKFKDL VDEIAESLAK DEGGESVEGS SAAGLLEKLS VNESKPEESA
201: AKEESSKETE TKAATTPSE
001: MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST
Arabidopsis Description
RANBP1CAt5g58590 [Source:UniProtKB/TrEMBL;Acc:Q1WWI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.