Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030675.1-P | Field mustard | cytosol | 97.32 | 97.32 |
| CDY15604 | Canola | cytosol | 96.88 | 96.88 |
| CDY09935 | Canola | cytosol | 92.41 | 92.0 |
| CDY59068 | Canola | cytosol | 91.07 | 90.67 |
| CDY06679 | Canola | cytosol | 88.39 | 90.0 |
| AT1G07140.1 | Thale cress | cytosol | 90.18 | 88.6 |
| CDX86501 | Canola | cytosol | 16.96 | 88.37 |
| CDX84862 | Canola | cytosol | 79.02 | 80.09 |
| CDY24034 | Canola | cytosol | 75.0 | 78.14 |
| Solyc06g082120.2.1 | Tomato | extracellular | 67.41 | 71.56 |
| PGSC0003DMT400052941 | Potato | cytosol | 67.41 | 71.23 |
| PGSC0003DMT400078073 | Potato | cytosol | 67.86 | 68.78 |
| CDY10250 | Canola | plastid | 73.66 | 67.07 |
| GSMUA_Achr7P22420_001 | Banana | cytosol | 58.93 | 64.39 |
| Os03t0292800-01 | Rice | plastid | 58.04 | 62.2 |
| GSMUA_Achr11P... | Banana | cytosol | 57.14 | 61.84 |
| TraesCS4D01G194600.1 | Wheat | cytosol | 55.36 | 60.19 |
| GSMUA_Achr11P... | Banana | cytosol | 57.14 | 60.09 |
| Os05t0350600-01 | Rice | cytosol, plasma membrane, plastid | 58.48 | 59.55 |
| TraesCS1A01G223800.1 | Wheat | cytosol | 58.93 | 59.46 |
| TraesCS1B01G237100.1 | Wheat | cytosol | 58.93 | 59.46 |
| TraesCS1D01G225400.1 | Wheat | cytosol | 58.93 | 59.46 |
| EER92413 | Sorghum | cytosol | 55.36 | 59.33 |
| TraesCS4A01G110400.1 | Wheat | cytosol | 54.46 | 58.94 |
| HORVU1Hr1G059970.2 | Barley | cytosol | 57.59 | 58.9 |
| GSMUA_Achr10P... | Banana | cytosol | 55.36 | 58.77 |
| TraesCS4B01G193600.1 | Wheat | cytosol | 54.02 | 58.45 |
| Zm00001d010504_P001 | Maize | extracellular | 57.59 | 58.37 |
| EES19356 | Sorghum | cytosol | 57.59 | 58.37 |
| CDX80354 | Canola | cytosol | 22.32 | 56.18 |
| GSMUA_Achr9P04480_001 | Banana | cytosol | 55.36 | 56.11 |
| Zm00001d028755_P001 | Maize | cytosol | 55.8 | 55.56 |
| Zm00001d047727_P002 | Maize | cytosol | 55.36 | 54.87 |
| Zm00001d037993_P001 | Maize | cytosol | 58.04 | 47.1 |
| HORVU4Hr1G056140.3 | Barley | plastid | 54.46 | 44.2 |
Protein Annotations
| EnsemblPlants:CDX86496 | EnsemblPlantsGene:GSBRNA2T00145096001 | Gene3D:2.30.29.30 | GO:A0A078DB47 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0046907 | InterPro:IPR000156 | InterPro:IPR011993 | InterPro:PH-like_dom_sf | InterPro:Ran_bind_dom | PANTHER:PTHR23138 |
| PANTHER:PTHR23138:SF107 | PFAM:PF00638 | PFscan:PS50196 | ProteinID:CDX86496 | ProteinID:CDX86496.1 | SEG:seg |
| SMART:SM00160 | SUPFAM:SSF50729 | UniParc:UPI0004EE3DA4 | MapMan:23.5.1.6 | : | : |
Description
BnaC08g02070D
Coordinates
chrLK031846:+:155268..157104
Molecular Weight (calculated)
25259.3 Da
IEP (calculated)
4.522
GRAVY (calculated)
-0.968
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MATNEPEHEH RDVEEAGANE DEDTGAQVAP IVRLEEVAVT TGEEDEDAVL DLKSKLYRFD KEANQWKERG AGTVKLLKHK STGKIRLVMR QSKTLKICAN
101: HFVTQGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKAFM QKFNEVAESE VEKEESKDAS DTAGLLEKLT VEETKTEEKP VEKEKTEVEA
201: DEKKKDEPEK AGEEKKTEEA SPST
101: HFVTQGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKAFM QKFNEVAESE VEKEESKDAS DTAGLLEKLT VEETKTEEKP VEKEKTEVEA
201: DEKKKDEPEK AGEEKKTEEA SPST
001: MATNEPEHEH RDEEEAGANE DEDTGAQVAP IVRLEEVAVT TGEEDEDAVL DLKSKLYRFD KDANQWKERG AGTVKFLKHK NTGKIRLVMR QSKTLKICAN
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST
Arabidopsis Description
RANBP1ARan-binding protein 1 homolog a [Source:UniProtKB/Swiss-Prot;Acc:Q9LMK7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.