CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84862
CDX86496
CDY06679
CDY09935
CDY10250
CDY15604
CDY24034
CDY59068

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55190.1	CDX86496	AT1G07140.1	9025305
AT5G55190.1	CDY06679	AT1G07140.1	9025305
AT5G55190.1	CDY09935	AT1G07140.1	9025305
AT5G55190.1	CDY10250	AT1G07140.1	9025305
AT5G55190.1	CDY15604	AT1G07140.1	9025305
AT5G55190.1	CDY59068	AT1G07140.1	9025305
AT5G55190.1	CDX84862	AT2G30060.1	9025305
AT5G55190.1	CDY24034	AT2G30060.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035562.1-P	Field mustard	cytosol, nucleus, plastid	84.94	99.55
AT5G55190.1	Thale cress	cytosol	83.78	98.19
CDY19907	Canola	cytosol	84.56	97.77
VIT_04s0008g05020.t01	Wine grape	cytosol	83.4	97.74
KRH61811	Soybean	cytosol	83.01	97.29
KRH61808	Soybean	nucleus	83.01	97.29
KRH52484	Soybean	cytosol	83.01	97.29
KRH52483	Soybean	nucleus	83.01	97.29
KRH52485	Soybean	cytosol	82.63	96.83
Os01t0611100-01	Rice	plastid	80.69	94.57
Solyc01g104680.2.1	Tomato	cytosol	80.69	94.57
Solyc01g104700.2.1	Tomato	cytosol, nucleus	80.69	94.57
Solyc05g023800.2.1	Tomato	nucleus	80.31	94.12
PGSC0003DMT400076528	Potato	cytosol	80.31	94.12
PGSC0003DMT400016576	Potato	cytosol	80.31	94.12
HORVU0Hr1G030130.1	Barley	cytosol	78.76	94.01
Zm00001d011474_P001	Maize	cytosol, plastid	79.54	93.21
Zm00001d044054_P002	Maize	cytosol	79.54	93.21
KXG32999	Sorghum	cytosol	79.54	93.21
EES01060	Sorghum	cytosol	78.76	92.73
Zm00001d011328_P001	Maize	cytosol	44.79	89.23
CDY06600	Canola	cytosol	85.33	89.11
CDX70904	Canola	extracellular	81.08	88.61
CDY20779	Canola	vacuole	85.71	87.4
Zm00001d039091_P002	Maize	cytosol	79.54	87.29
VIT_11s0016g04780.t01	Wine grape	plastid	84.94	84.62
KXG22580	Sorghum	cytosol, nucleus	30.89	84.21
TraesCS7B01G254000.2	Wheat	cytosol	71.81	83.41
Zm00001d039090_P001	Maize	cytosol	79.54	81.42
KRH61809	Soybean	nucleus	84.56	75.52
GSMUA_AchrUn_...	Banana	cytosol	60.62	69.47
CDY61737	Canola	cytosol, mitochondrion, nucleus	15.44	59.7
TraesCS7D01G155200.2	Wheat	plastid	22.78	29.95

Protein Annotations

MapMan:23.5.1.4	Gene3D:3.40.50.300	GO:A0A078FVW7	UniProt:A0A078FVW7	EnsemblPlants:CDY17309	ProteinID:CDY17309
ProteinID:CDY17309.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006810
GO:GO:0006913	GO:GO:0008150	GO:GO:0015031	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00095400001	InterPro:IPR002041
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00627	PFscan:PS51418	PANTHER:PTHR24071	PANTHER:PTHR24071:SF7
InterPro:Ran_GTPase	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EDB4D5	SEG:seg	:

Description

BnaA10g09430DGTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVW7]

Coordinates

chrLK032072:+:189589..191480

Molecular Weight (calculated)

29056.7 Da

IEP (calculated)

8.143

GRAVY (calculated)

-0.410

Length

259 amino acids

Sequence
(BLAST)

001: MRGQCLICIS RETFGPGSGS GSSSGLLGKR ICVNLKRPQA LPNQQTVDYP SFKLVIVGDG GTGKTTFVKR HLTGEFEKKY EPTIGVEVHP LDFFTNCGKI
101: RFYCWDTAGQ EKFGGLRDGY YIHGQCAVIM FDVTARLTYK NVPTWHRDLC RVCENIPIVL CGNKVDVKNR QVKAKQVTFH RKKNLQYYEI SAKSNYNFEK
201: PFLYLARKLA GDPNLHFVES PALAPPEVQI DMAAQQQHEA ELAAAASQPL PDDDDDTFE

Best Arabidopsis Sequence Match ( AT5G55190.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E

Arabidopsis Description

RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.