Factsheet for VIT_04s0008g05020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g06880.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55190.1	VIT_06s0004g06880.t01	AT1G07140.1	9025305
AT5G55190.1	VIT_06s0004g06880.t01	AT2G30060.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G55190.1	Thale cress	cytosol	98.64	98.64
Bra035562.1-P	Field mustard	cytosol, nucleus, plastid	98.19	98.19
Bra002926.1-P	Field mustard	cytosol, nucleus, plastid	97.29	97.29
VIT_09s0002g05940.t01	Wine grape	cytosol	97.29	97.29
Solyc05g023800.2.1	Tomato	nucleus	96.38	96.38
PGSC0003DMT400016576	Potato	cytosol	96.38	96.38
CDY19907	Canola	cytosol	97.29	95.98
Solyc01g104700.2.1	Tomato	cytosol, nucleus	95.93	95.93
Solyc01g104680.2.1	Tomato	cytosol	95.93	95.93
Os01t0611100-01	Rice	plastid	95.93	95.93
PGSC0003DMT400076528	Potato	cytosol	95.48	95.48
HORVU0Hr1G030130.1	Barley	cytosol	93.21	94.93
KXG32999	Sorghum	cytosol	93.21	93.21
Zm00001d044054_P002	Maize	cytosol	93.21	93.21
Zm00001d011474_P001	Maize	cytosol, plastid	93.21	93.21
EES01060	Sorghum	cytosol	92.76	93.18
Zm00001d011328_P001	Maize	cytosol	52.04	88.46
Zm00001d039091_P002	Maize	cytosol	93.67	87.71
CDY06600	Canola	cytosol	98.19	87.5
CDY20779	Canola	vacuole	97.74	85.04
VIT_11s0016g04780.t01	Wine grape	plastid	100.0	85.0
TraesCS7B01G254000.2	Wheat	cytosol	84.62	83.86
CDY17309	Canola	plastid	97.74	83.4
KXG22580	Sorghum	cytosol, nucleus	35.75	83.16
Zm00001d039090_P001	Maize	cytosol	93.67	81.82
VIT_04s0008g05030.t01	Wine grape	cytosol	96.83	70.16
VIT_18s0001g11670.t01	Wine grape	endoplasmic reticulum, extracellular	51.13	69.33
GSMUA_AchrUn_...	Banana	cytosol	70.59	69.03
TraesCS7D01G155200.2	Wheat	plastid	25.79	28.93

Protein Annotations

EntrezGene:100247365	wikigene:100247365	EntrezGene:100250818	wikigene:100250818	MapMan:23.5.1.4	Gene3D:3.40.50.300
ProteinID:CCB46775	ProteinID:CCB46775.1	UniProt:F6H3T8	EMBL:FN595231	GO:GO:0000054	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810
GO:GO:0006913	GO:GO:0008150	GO:GO:0015031	GO:GO:0016787	InterPro:IPR002041	EntrezGene:LOC100247365
wikigene:LOC100247365	EntrezGene:LOC100250818	wikigene:LOC100250818	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00627
PFscan:PS51418	PANTHER:PTHR24071	PANTHER:PTHR24071:SF7	InterPro:Ran_GTPase	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGR:TC54639
TIGR:TC55384	TIGR:TC63634	TIGR:TC68268	TIGRFAMs:TIGR00231	UniParc:UPI000198307E	ArrayExpress:VIT_04s0008g05020
EnsemblPlantsGene:VIT_04s0008g05020	EnsemblPlants:VIT_04s0008g05020.t01	unigene:Vvi.13209	RefSeq:XP_002284967	RefSeq:XP_002284967.1	SEG:seg

Description

GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:F6H3T8]

Coordinates

chr4:+:4517392..4521443

Molecular Weight (calculated)

25085.8 Da

IEP (calculated)

6.933

GRAVY (calculated)

-0.421

Length

221 amino acids

Sequence
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDPNLHFV ESPALAPPEV HIDLAAQQQH
201: EAELAAAASQ PLPDDDDDAF E

Best Arabidopsis Sequence Match ( AT5G55190.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E

Arabidopsis Description

RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.