Factsheet for VIT_09s0002g05940.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g02830.t01
VIT_06s0004g06880.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20010.1	VIT_06s0004g06880.t01	AT1G07140.1	9025305
AT5G20010.1	VIT_03s0038g02830.t01	AT2G16950.1	14756317
AT5G20010.1	VIT_06s0004g06880.t01	AT2G30060.1	9025305
AT5G20020.1	VIT_06s0004g06880.t01	AT1G07140.1	9025305
AT5G20020.1	VIT_06s0004g06880.t01	AT2G30060.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g05020.t01	Wine grape	cytosol	97.29	97.29
AT5G20020.1	Thale cress	cytosol	96.38	96.38
AT5G20010.1	Thale cress	cytosol	95.02	95.02
Os01t0611100-01	Rice	plastid	95.02	95.02
Zm00001d044054_P002	Maize	cytosol	93.67	93.67
Zm00001d011474_P001	Maize	cytosol, plastid	93.67	93.67
KXG32999	Sorghum	cytosol	93.67	93.67
EES01060	Sorghum	cytosol	93.21	93.64
CDX70904	Canola	extracellular	95.48	89.03
Zm00001d011328_P001	Maize	cytosol	52.04	88.46
Zm00001d039091_P002	Maize	cytosol	93.21	87.29
TraesCS7B01G254000.2	Wheat	cytosol	84.62	83.86
VIT_11s0016g04780.t01	Wine grape	plastid	97.29	82.69
KXG22580	Sorghum	cytosol, nucleus	35.29	82.11
Zm00001d039090_P001	Maize	cytosol	93.21	81.42
VIT_04s0008g05030.t01	Wine grape	cytosol	97.29	70.49
VIT_18s0001g11670.t01	Wine grape	endoplasmic reticulum, extracellular	50.23	68.1
CDY61737	Canola	cytosol, mitochondrion, nucleus	19.0	62.69
TraesCS7D01G155200.2	Wheat	plastid	25.79	28.93

Protein Annotations

EntrezGene:100266996	wikigene:100266996	MapMan:23.5.1.4	Gene3D:3.40.50.300	ProteinID:CCB59559	ProteinID:CCB59559.1
UniProt:F6HX89	EMBL:FN596494	GO:GO:0000054	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150
GO:GO:0015031	GO:GO:0016787	InterPro:IPR002041	EntrezGene:LOC100266996	wikigene:LOC100266996	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00627	PFscan:PS51418	PANTHER:PTHR24071	PANTHER:PTHR24071:SF7	InterPro:Ran_GTPase
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGR:TC53432	TIGR:TC53902	TIGRFAMs:TIGR00231	UniParc:UPI0001983F63	ArrayExpress:VIT_09s0002g05940
EnsemblPlantsGene:VIT_09s0002g05940	EnsemblPlants:VIT_09s0002g05940.t01	RefSeq:XP_002285307	RefSeq:XP_002285307.1	SEG:seg	:

Description

GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:F6HX89]

Coordinates

chr9:+:5754639..5757788

Molecular Weight (calculated)

25098.9 Da

IEP (calculated)

6.862

GRAVY (calculated)

-0.404

Length

221 amino acids

Sequence
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDMAAQQQH
201: EAELMAAAAQ PLPDDDDDAF D

Best Arabidopsis Sequence Match ( AT5G55190.1 )
(BLAST)

Arabidopsis Description

RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.