Factsheet for VIT_06s0004g06880.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g05020.t01
VIT_04s0008g05030.t01
VIT_09s0002g05940.t01
VIT_11s0016g04780.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07140.1	VIT_04s0008g05030.t01	AT5G20010.1	9025305
AT1G07140.1	VIT_09s0002g05940.t01	AT5G20010.1	9025305
AT1G07140.1	VIT_04s0008g05030.t01	AT5G20020.1	9025305
AT1G07140.1	VIT_09s0002g05940.t01	AT5G20020.1	9025305
AT1G07140.1	VIT_04s0008g05020.t01	AT5G55190.1	21798944
AT1G07140.1	VIT_11s0016g04780.t01	AT5G55190.1	21798944
AT1G07140.1	VIT_04s0008g05020.t01	AT5G55190.1	9025305
AT1G07140.1	VIT_11s0016g04780.t01	AT5G55190.1	9025305
AT2G30060.1	VIT_04s0008g05030.t01	AT5G20010.1	9025305
AT2G30060.1	VIT_09s0002g05940.t01	AT5G20010.1	9025305
AT2G30060.1	VIT_04s0008g05030.t01	AT5G20020.1	9025305
AT2G30060.1	VIT_09s0002g05940.t01	AT5G20020.1	9025305
AT2G30060.1	VIT_04s0008g05020.t01	AT5G55190.1	9025305
AT2G30060.1	VIT_11s0016g04780.t01	AT5G55190.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86501	Canola	cytosol	15.25	79.07
VIT_08s0217g00030.t01	Wine grape	cytosol	77.13	77.83
Solyc06g082120.2.1	Tomato	extracellular	73.54	77.73
PGSC0003DMT400078073	Potato	cytosol	74.44	75.11
KRH35051	Soybean	endoplasmic reticulum	72.2	73.85
PGSC0003DMT400052941	Potato	cytosol	69.96	73.58
KRG91719	Soybean	endoplasmic reticulum	70.85	70.85
Bra030675.1-P	Field mustard	cytosol	70.4	70.09
AT2G30060.1	Thale cress	cytosol	68.16	70.05
Bra015554.1-P	Field mustard	cytosol	68.61	69.55
AT5G58590.1	Thale cress	cytosol	68.16	69.41
AT1G07140.1	Thale cress	cytosol	70.4	68.86
Bra022775.1-P	Field mustard	cytosol	68.16	68.78
Bra031555.1-P	Field mustard	cytosol	68.61	67.11
VIT_04s0008g01410.t01	Wine grape	cytosol	61.88	62.73
CDX80354	Canola	cytosol	22.42	56.18

Protein Annotations

EntrezGene:100257001	wikigene:100257001	Gene3D:2.30.29.30	MapMan:23.5.1.6	ProteinID:CCB43463	ProteinID:CCB43463.1
UniProt:F6GUQ0	EMBL:FN594951	GO:GO:0000082	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006405	GO:GO:0006511	GO:GO:0006606	GO:GO:0006810	GO:GO:0007049	GO:GO:0007051
GO:GO:0008150	GO:GO:0008152	GO:GO:0008536	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0030234	GO:GO:0043547	GO:GO:0046907	InterPro:IPR000156	InterPro:IPR011993
EntrezGene:LOC100257001	wikigene:LOC100257001	PFAM:PF00638	InterPro:PH-like_dom_sf	PFscan:PS50196	PANTHER:PTHR23138
PANTHER:PTHR23138:SF107	InterPro:Ran_bind_dom	SMART:SM00160	SUPFAM:SSF50729	TIGR:TC64535	UniParc:UPI000198360F
ArrayExpress:VIT_06s0004g06880	EnsemblPlantsGene:VIT_06s0004g06880	EnsemblPlants:VIT_06s0004g06880.t01	unigene:Vvi.12649	RefSeq:XP_002276692	RefSeq:XP_002276692.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:7606485..7612182

Molecular Weight (calculated)

24690.5 Da

IEP (calculated)

4.421

GRAVY (calculated)

-0.891

Length

223 amino acids

Sequence
(BLAST)

001: MASSDPERRE DEDAAAAAED EDTGAQVAPI VKLEEVAVTT GEEDEDAVLD LKAKLYRFDK DGNQWKERGA GSVKLLKHKE SGKVRLVMRQ SKTLKICANH
101: LVLPTMSVQE HAGNDKSCVW HATDFADGEL KDELFCIRFA SVENCKSFME KVQEVAESQQ KKEENKDASA AAGLLEKLSV EEKETEDKAE EEKPVAAKEE
201: KETESEQGKT DAEKKVEEPS SST

Best Arabidopsis Sequence Match ( AT2G30060.1 )
(BLAST)

001: MASISNEPER ENRDEEETGA NEDEDTGAQV APIVRLEEVA VTTGEEDEDT ILDLKSKLYR FDKDGSQWKE RGAGTVKFLK HRVSGKIRLV MRQSKTLKIC
101: ANHLVGSGMS VQEHAGNDKS CVWHARDFSD GELKDELFCI RFASVENCKA FMQKFKEVAE SEEEKEESKD ASDTAGLLEK LTVEEKESEK KPVEKAEENK
201: KSEAVEEKKT EESVPSA

Arabidopsis Description

RANBP1BRan-binding protein 1 homolog b [Source:UniProtKB/Swiss-Prot;Acc:Q8RWG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.