Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g104680.2.1 | |
| Solyc01g104700.2.1 | |
| Solyc05g023800.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078073 | Potato | cytosol | 94.31 | 90.05 |
| VIT_06s0004g06880.t01 | Wine grape | cytosol | 77.73 | 73.54 |
| KRH35051 | Soybean | endoplasmic reticulum | 72.99 | 70.64 |
| KRG91719 | Soybean | endoplasmic reticulum | 73.93 | 69.96 |
| CDY09935 | Canola | cytosol | 72.51 | 68.0 |
| Bra031555.1-P | Field mustard | cytosol | 73.46 | 67.98 |
| CDY15604 | Canola | cytosol | 72.04 | 67.86 |
| AT2G30060.1 | Thale cress | cytosol | 69.67 | 67.74 |
| CDY24034 | Canola | cytosol | 68.72 | 67.44 |
| CDX86496 | Canola | cytosol | 71.56 | 67.41 |
| CDY06679 | Canola | cytosol | 70.14 | 67.27 |
| Bra015554.1-P | Field mustard | cytosol | 70.14 | 67.27 |
| CDY59068 | Canola | cytosol | 71.56 | 67.11 |
| Bra030675.1-P | Field mustard | cytosol | 71.09 | 66.96 |
| AT5G58590.1 | Thale cress | cytosol | 69.19 | 66.67 |
| CDX84862 | Canola | cytosol | 69.67 | 66.52 |
| Bra022775.1-P | Field mustard | cytosol | 69.67 | 66.52 |
| AT1G07140.1 | Thale cress | cytosol | 71.09 | 65.79 |
| Solyc08g062660.2.1 | Tomato | nucleus, plastid | 66.82 | 62.95 |
| CDY10250 | Canola | plastid | 60.19 | 51.63 |
Protein Annotations
| Gene3D:2.30.29.30 | MapMan:23.5.1.6 | GO:GO:0000082 | GO:GO:0003674 | GO:GO:0005096 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006405 | GO:GO:0006511 | GO:GO:0006606 | GO:GO:0006810 | GO:GO:0007049 | GO:GO:0007051 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008536 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0019538 | GO:GO:0030234 | GO:GO:0043547 | GO:GO:0046907 | InterPro:IPR000156 | InterPro:IPR011993 |
| UniProt:K4CA71 | PFAM:PF00638 | InterPro:PH-like_dom_sf | PFscan:PS50196 | PANTHER:PTHR23138 | PANTHER:PTHR23138:SF107 |
| InterPro:Ran_bind_dom | SMART:SM00160 | SUPFAM:SSF50729 | EnsemblPlantsGene:Solyc06g082120.2 | EnsemblPlants:Solyc06g082120.2.1 | UniParc:UPI000276559D |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:48043171..48046113
Molecular Weight (calculated)
23640.5 Da
IEP (calculated)
4.538
GRAVY (calculated)
-0.878
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAEPEREH REEEEAAGAE DEDTGAQVAP IVRLEEVAVT TGEENEDAIL DLKAKLYRFD KEGNQWKERG AGTVKLLKHK ETGKVRLLMR QSKTLKICAN
101: HLVIPTMTVQ EHAGNEKSCV WHAADFADGE LKDEFFCIRF ASLENCKTFM ETVQEVAESQ TKKEENVDAS NAAGLLEKLS VEDKKPQEKS EEKTEEKPTD
201: NAEKKEETAS A
101: HLVIPTMTVQ EHAGNEKSCV WHAADFADGE LKDEFFCIRF ASLENCKTFM ETVQEVAESQ TKKEENVDAS NAAGLLEKLS VEDKKPQEKS EEKTEEKPTD
201: NAEKKEETAS A
001: MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST
Arabidopsis Description
RANBP1CAt5g58590 [Source:UniProtKB/TrEMBL;Acc:Q1WWI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.