Factsheet for Solyc05g023800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g082120.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55190.1	Solyc06g082120.2.1	AT1G07140.1	9025305
AT5G55190.1	Solyc06g082120.2.1	AT2G30060.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016576	Potato	cytosol	100.0	100.0
Solyc01g104700.2.1	Tomato	cytosol, nucleus	98.19	98.19
Solyc01g104680.2.1	Tomato	cytosol	98.19	98.19
VIT_04s0008g05020.t01	Wine grape	cytosol	96.38	96.38
KRH61811	Soybean	cytosol	95.93	95.93
KRH52485	Soybean	cytosol	95.93	95.93
KRH52484	Soybean	cytosol	95.93	95.93
AT5G55190.1	Thale cress	cytosol	95.48	95.48
KRH61808	Soybean	nucleus	95.48	95.48
KRH52483	Soybean	nucleus	95.48	95.48
Bra035562.1-P	Field mustard	cytosol, nucleus, plastid	94.57	94.57
Os01t0611100-01	Rice	plastid	93.67	93.67
Bra002926.1-P	Field mustard	cytosol, nucleus, plastid	93.67	93.67
CDY19907	Canola	cytosol	93.67	92.41
HORVU0Hr1G030130.1	Barley	cytosol	90.5	92.17
Zm00001d011474_P001	Maize	cytosol, plastid	90.5	90.5
Zm00001d044054_P002	Maize	cytosol	90.5	90.5
KXG32999	Sorghum	cytosol	90.5	90.5
EES01060	Sorghum	cytosol	90.05	90.45
Zm00001d039091_P002	Maize	cytosol	90.5	84.75
Zm00001d011328_P001	Maize	cytosol	49.77	84.62
CDY06600	Canola	cytosol	94.57	84.27
VIT_11s0016g04780.t01	Wine grape	plastid	96.38	81.92
CDY20779	Canola	vacuole	94.12	81.89
TraesCS7B01G254000.2	Wheat	cytosol	82.35	81.61
CDY17309	Canola	plastid	94.12	80.31
Zm00001d039090_P001	Maize	cytosol	90.5	79.05
KXG22580	Sorghum	cytosol, nucleus	33.48	77.89
KRH61809	Soybean	nucleus	95.93	73.1
VIT_18s0001g11670.t01	Wine grape	endoplasmic reticulum, extracellular	51.13	69.33
GSMUA_AchrUn_...	Banana	cytosol	67.87	66.37
Solyc06g082720.1.1	Tomato	golgi	47.51	51.72
TraesCS7D01G155200.2	Wheat	plastid	25.79	28.93

Protein Annotations

MapMan:23.5.1.4	Gene3D:3.40.50.300	GO:GO:0000054	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150
GO:GO:0015031	GO:GO:0016787	InterPro:IPR002041	EMBL:L28713	InterPro:P-loop_NTPase	UniProt:P38546
PFAM:PF00071	PRINTS:PR00627	PFscan:PS51418	PANTHER:PTHR24071	PANTHER:PTHR24071:SF7	InterPro:Ran_GTPase
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	EnsemblPlantsGene:Solyc05g023800.2	EnsemblPlants:Solyc05g023800.2.1	TIGRFAMs:TIGR00231	UniParc:UPI00001330FB	:

Description

RAN1GTP-binding nuclear protein Ran1 [Source:UniProtKB/Swiss-Prot;Acc:P38546]

Coordinates

chr5:+:29353913..29357343

Molecular Weight (calculated)

25187.0 Da

IEP (calculated)

6.709

GRAVY (calculated)

-0.443

Length

221 amino acids

Sequence
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDGNLHFV ESPALAPPEV HIDLAAQALH
201: EEELQQAANQ PLPDDDDEAF E

Best Arabidopsis Sequence Match ( AT5G55190.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E

Arabidopsis Description

RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.