Factsheet for Solyc06g082720.1.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 3
cytosol 2
nucleus 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078306	Potato	cytosol	75.37	66.52
KXG22580	Sorghum	cytosol, nucleus	24.63	52.63
Solyc05g023800.2.1	Tomato	nucleus	51.72	47.51
Solyc01g104700.2.1	Tomato	cytosol, nucleus	51.72	47.51
Solyc01g104680.2.1	Tomato	cytosol	51.72	47.51
Os01t0611100-01	Rice	plastid	51.23	47.06
Zm00001d044054_P002	Maize	cytosol	50.25	46.15
Zm00001d011474_P001	Maize	cytosol, plastid	50.25	46.15
KXG32999	Sorghum	cytosol	50.25	46.15
EES01060	Sorghum	cytosol	49.26	45.45
KRH56644	Soybean	cytosol	47.78	43.89
Zm00001d039091_P002	Maize	cytosol	50.25	43.22
TraesCS7B01G254000.2	Wheat	cytosol	47.29	43.05
Zm00001d039090_P001	Maize	cytosol	50.25	40.32
GSMUA_Achr5P06130_001	Banana	cytosol	51.23	39.69
Zm00001d011328_P001	Maize	cytosol	25.12	39.23
AT5G55080.1	Thale cress	cytosol	36.45	33.33
TraesCS7D01G155200.2	Wheat	plastid	15.76	16.24

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:GO:0000054	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	InterPro:IPR002041	UniProt:K4CAC7	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00627	PANTHER:PTHR24071	PANTHER:PTHR24071:SF7	InterPro:Ran_GTPase	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc06g082720.1	EnsemblPlants:Solyc06g082720.1.1	TMHMM:TMhelix	UniParc:UPI00027659D0
SEG:seg	:	:	:	:	:

Description

GTP-binding nuclear protein Ran-4 [Source:Projected from Arabidopsis thaliana (AT5G55080) UniProtKB/Swiss-Prot;Acc:Q9FLQ3]

Coordinates

chr6:-:48442820..48443778

Molecular Weight (calculated)

24148.7 Da

IEP (calculated)

5.165

GRAVY (calculated)

-0.464

Length

203 amino acids

Sequence
(BLAST)

001: MNAKAVLVKL LFLKRHLNGE FDRNYEPTIS VEVHPLDFFT NYGKNRFNCW DTVGQENLGC LRDSYYIDGQ CMYLHGIAIC LSFVKLFLLF FAETKWIDIK
101: HKQIKAREIN FYRRKKNWQY YEISAKSNYN LELPFLFLAR KLVNDDNLHF EESPAIAPPE VKFDLDTEKW RETEFLNCIP KLPLPDEDDD LADDIRGFDE
201: RTD

Best Arabidopsis Sequence Match ( AT5G55190.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E

Arabidopsis Description

RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.