CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
plastid 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32999	Sorghum	cytosol	87.33	87.33
Zm00001d044054_P002	Maize	cytosol	87.33	87.33
Zm00001d011474_P001	Maize	cytosol, plastid	87.33	87.33
Os01t0611100-01	Rice	plastid	87.33	87.33
KRH61808	Soybean	nucleus	87.33	87.33
KRH52483	Soybean	nucleus	87.33	87.33
KRH52485	Soybean	cytosol	86.88	86.88
KRH52484	Soybean	cytosol	86.88	86.88
KRH61811	Soybean	cytosol	86.88	86.88
EES01060	Sorghum	cytosol	85.52	85.91
Zm00001d039091_P002	Maize	cytosol	87.33	81.78
TraesCS7B01G254000.2	Wheat	cytosol	80.54	79.82
Zm00001d011328_P001	Maize	cytosol	46.15	78.46
KXG22580	Sorghum	cytosol, nucleus	33.03	76.84
Zm00001d039090_P001	Maize	cytosol	87.33	76.28
GSMUA_Achr5P06130_001	Banana	cytosol	86.88	73.28
KRH61809	Soybean	nucleus	86.88	66.21
PGSC0003DMT400078306	Potato	cytosol	67.87	65.22
AT5G55080.1	Thale cress	cytosol	60.63	60.36
Solyc06g082720.1.1	Tomato	golgi	43.89	47.78
TraesCS7D01G155200.2	Wheat	plastid	24.89	27.92

Protein Annotations

EntrezGene:100775298	MapMan:23.5.1.4	Gene3D:3.40.50.300	EMBL:ACUP02002791	EMBL:BT096425	UniProt:C6TFN5
EnsemblPlantsGene:GLYMA_05G010300	GO:GO:0000054	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150	GO:GO:0015031
GO:GO:0016787	InterPro:IPR002041	EnsemblPlants:KRH56644	ProteinID:KRH56644	ProteinID:KRH56644.1	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00627	PFscan:PS51418	PANTHER:PTHR24071	PANTHER:PTHR24071:SF7	InterPro:Ran_GTPase
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00019AA89E	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:898596..900947

Molecular Weight (calculated)

25301.3 Da

IEP (calculated)

6.987

GRAVY (calculated)

-0.389

Length

221 amino acids

Sequence
(BLAST)

001: MALPQQHTVD YPSFKLVIVG DGGTGKTTFV KRHITGEFEK KYEPTIGVEV HPLDFHTNCG RIRFYCWDTA GQEKFGGLRD GYYIHGHCAI IMFDVTARMT
101: YRNVATWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLAKK LAGDQGLHFV EMPALAPPDV VIDIATQQLN
201: EEEICRAAAQ PLPDDEDDLF E

Best Arabidopsis Sequence Match ( AT5G20010.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDQNLHFV ETPALAPPEV HIDIADQQKN
201: EAELLQAAAQ PLPDDDDDIF E

Arabidopsis Description

RAN1GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UC18]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.