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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:secretory
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
nucleus: 18022940
plastid: 27992503
plasma membrane: 28056797
msms PMID: 18022940 doi
F Tan, G Li, BR Chitteti, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_04s0008g05020.t01 Wine grape cytosol 95.93 95.93
AT5G55190.1 Thale cress cytosol 95.93 95.93
EES01060 Sorghum cytosol 95.48 95.91
KRH61808 Soybean nucleus 95.48 95.48
KRH52483 Soybean nucleus 95.48 95.48
VIT_09s0002g05940.t01 Wine grape cytosol 95.02 95.02
KRH61811 Soybean cytosol 95.02 95.02
Bra035562.1-P Field mustard cytosol, nucleus, plastid 95.02 95.02
KRH52485 Soybean cytosol 95.02 95.02
KRH52484 Soybean cytosol 95.02 95.02
AT5G20020.1 Thale cress cytosol 94.57 94.57
Bra002926.1-P Field mustard cytosol, nucleus, plastid 94.57 94.57
AT5G20010.1 Thale cress cytosol 94.12 94.12
Zm00001d011328_P001 Maize cytosol 55.2 93.85
Solyc05g023800.2.1 Tomato nucleus 93.67 93.67
Solyc01g104700.2.1 Tomato cytosol, nucleus 93.67 93.67
Solyc01g104680.2.1 Tomato cytosol 93.67 93.67
PGSC0003DMT400016576 Potato cytosol 93.67 93.67
PGSC0003DMT400076528 Potato cytosol 93.21 93.21
CDY19907 Canola cytosol 94.12 92.86
KRH56644 Soybean cytosol 87.33 87.33
CDX70904 Canola extracellular 93.21 86.92
GSMUA_Achr5P09850_001 Banana plasma membrane 95.48 85.77
TraesCS7B01G254000.2 Wheat cytosol 85.97 85.2
CDY06600 Canola cytosol 95.02 84.68
CDY20779 Canola vacuole 94.57 82.28
GSMUA_Achr6P01500_001 Banana vacuole 93.67 82.14
GSMUA_Achr1P11790_001 Banana cytosol, golgi 95.48 81.78
VIT_11s0016g04780.t01 Wine grape plastid 95.93 81.54
CDY17309 Canola plastid 94.57 80.69
GSMUA_Achr4P00780_001 Banana mitochondrion 95.48 79.92
GSMUA_Achr5P06130_001 Banana cytosol 89.59 75.57
GSMUA_Achr1P05300_001 Banana mitochondrion 95.02 75.27
GSMUA_Achr1P14580_001 Banana cytosol 94.57 73.59
KRH61809 Soybean nucleus 95.02 72.41
VIT_04s0008g05030.t01 Wine grape cytosol 95.02 68.85
PGSC0003DMT400078306 Potato cytosol 71.49 68.7
GSMUA_AchrUn_... Banana cytosol 68.33 66.81
VIT_18s0001g11670.t01 Wine grape endoplasmic reticulum, extracellular 48.87 66.26
AT5G55080.1 Thale cress cytosol 63.8 63.51
CDY61737 Canola cytosol, mitochondrion, nucleus 17.65 58.21
Solyc06g082720.1.1 Tomato golgi 47.06 51.23
GSMUA_Achr6P01550_001 Banana nucleus 95.48 44.33
TraesCS7D01G155200.2 Wheat plastid 25.79 28.93
Protein Annotations
MapMan:23.5.1.4Gene3D:3.40.50.300EntrezGene:4325312EMBL:AB015288EMBL:AB015971EMBL:AK072731
ProteinID:BAB21295.1ProteinID:BAB93265.1ProteinID:BAF05464.1ProteinID:BAS73119.1ProteinID:EAZ12660.1GO:GO:0000054
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006606
GO:GO:0006810GO:GO:0006913GO:GO:0008150GO:GO:0015031GO:GO:0016787InterPro:IPR002041
EnsemblPlantsGene:Os01g0611100EnsemblPlants:Os01t0611100-01InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00627PFscan:PS51418
PANTHER:PTHR24071PANTHER:PTHR24071:SF8UniProt:Q7F7I7InterPro:Ran_GTPaseSMART:SM00173SMART:SM00174
SMART:SM00175SMART:SM00176SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPaseTIGRFAMs:TIGR00231
UniParc:UPI00000ABC7CRefSeq:XP_015622838.1SEG:seg:::
Description
OsRAN1, RAN1Similar to GTP-binding nuclear protein Ran-2. (Os01t0611100-01)
Coordinates
chr1:+:24187312..24189794
Molecular Weight (calculated)
25003.8 Da
IEP (calculated)
6.862
GRAVY (calculated)
-0.389
Length
221 amino acids
Sequence
(BLAST)
001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTSRLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EVSAKSNYNF EKPFLYLARK LAGDGNLHFV ETPALAPPDV TIDLAAQQQH
201: EAELAAAAAQ PLPDDDDDLI E
Best Arabidopsis Sequence Match ( AT5G55190.1 )
(BLAST)
001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E
Arabidopsis Description
RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.