Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- cytosol 3
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
18022940
plastid: 27992503 plasma membrane: 28056797 |
msms PMID:
18022940
doi
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os03t0292800-01 | |
Os04t0691500-01 | |
Os04t0691600-02 | |
Os05t0350600-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_04s0008g05020.t01 | Wine grape | cytosol | 95.93 | 95.93 |
AT5G55190.1 | Thale cress | cytosol | 95.93 | 95.93 |
EES01060 | Sorghum | cytosol | 95.48 | 95.91 |
KRH61808 | Soybean | nucleus | 95.48 | 95.48 |
KRH52483 | Soybean | nucleus | 95.48 | 95.48 |
VIT_09s0002g05940.t01 | Wine grape | cytosol | 95.02 | 95.02 |
KRH61811 | Soybean | cytosol | 95.02 | 95.02 |
Bra035562.1-P | Field mustard | cytosol, nucleus, plastid | 95.02 | 95.02 |
KRH52485 | Soybean | cytosol | 95.02 | 95.02 |
KRH52484 | Soybean | cytosol | 95.02 | 95.02 |
AT5G20020.1 | Thale cress | cytosol | 94.57 | 94.57 |
Bra002926.1-P | Field mustard | cytosol, nucleus, plastid | 94.57 | 94.57 |
AT5G20010.1 | Thale cress | cytosol | 94.12 | 94.12 |
Zm00001d011328_P001 | Maize | cytosol | 55.2 | 93.85 |
Solyc05g023800.2.1 | Tomato | nucleus | 93.67 | 93.67 |
Solyc01g104700.2.1 | Tomato | cytosol, nucleus | 93.67 | 93.67 |
Solyc01g104680.2.1 | Tomato | cytosol | 93.67 | 93.67 |
PGSC0003DMT400016576 | Potato | cytosol | 93.67 | 93.67 |
PGSC0003DMT400076528 | Potato | cytosol | 93.21 | 93.21 |
CDY19907 | Canola | cytosol | 94.12 | 92.86 |
KRH56644 | Soybean | cytosol | 87.33 | 87.33 |
CDX70904 | Canola | extracellular | 93.21 | 86.92 |
GSMUA_Achr5P09850_001 | Banana | plasma membrane | 95.48 | 85.77 |
TraesCS7B01G254000.2 | Wheat | cytosol | 85.97 | 85.2 |
CDY06600 | Canola | cytosol | 95.02 | 84.68 |
CDY20779 | Canola | vacuole | 94.57 | 82.28 |
GSMUA_Achr6P01500_001 | Banana | vacuole | 93.67 | 82.14 |
GSMUA_Achr1P11790_001 | Banana | cytosol, golgi | 95.48 | 81.78 |
VIT_11s0016g04780.t01 | Wine grape | plastid | 95.93 | 81.54 |
CDY17309 | Canola | plastid | 94.57 | 80.69 |
GSMUA_Achr4P00780_001 | Banana | mitochondrion | 95.48 | 79.92 |
GSMUA_Achr5P06130_001 | Banana | cytosol | 89.59 | 75.57 |
GSMUA_Achr1P05300_001 | Banana | mitochondrion | 95.02 | 75.27 |
GSMUA_Achr1P14580_001 | Banana | cytosol | 94.57 | 73.59 |
KRH61809 | Soybean | nucleus | 95.02 | 72.41 |
VIT_04s0008g05030.t01 | Wine grape | cytosol | 95.02 | 68.85 |
PGSC0003DMT400078306 | Potato | cytosol | 71.49 | 68.7 |
GSMUA_AchrUn_... | Banana | cytosol | 68.33 | 66.81 |
VIT_18s0001g11670.t01 | Wine grape | endoplasmic reticulum, extracellular | 48.87 | 66.26 |
AT5G55080.1 | Thale cress | cytosol | 63.8 | 63.51 |
CDY61737 | Canola | cytosol, mitochondrion, nucleus | 17.65 | 58.21 |
Solyc06g082720.1.1 | Tomato | golgi | 47.06 | 51.23 |
GSMUA_Achr6P01550_001 | Banana | nucleus | 95.48 | 44.33 |
TraesCS7D01G155200.2 | Wheat | plastid | 25.79 | 28.93 |
Protein Annotations
MapMan:23.5.1.4 | Gene3D:3.40.50.300 | EntrezGene:4325312 | EMBL:AB015288 | EMBL:AB015971 | EMBL:AK072731 |
ProteinID:BAB21295.1 | ProteinID:BAB93265.1 | ProteinID:BAF05464.1 | ProteinID:BAS73119.1 | ProteinID:EAZ12660.1 | GO:GO:0000054 |
GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006606 |
GO:GO:0006810 | GO:GO:0006913 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016787 | InterPro:IPR002041 |
EnsemblPlantsGene:Os01g0611100 | EnsemblPlants:Os01t0611100-01 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00627 | PFscan:PS51418 |
PANTHER:PTHR24071 | PANTHER:PTHR24071:SF8 | UniProt:Q7F7I7 | InterPro:Ran_GTPase | SMART:SM00173 | SMART:SM00174 |
SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 |
UniParc:UPI00000ABC7C | RefSeq:XP_015622838.1 | SEG:seg | : | : | : |
Description
OsRAN1, RAN1Similar to GTP-binding nuclear protein Ran-2. (Os01t0611100-01)
Coordinates
chr1:+:24187312..24189794
Molecular Weight (calculated)
25003.8 Da
IEP (calculated)
6.862
GRAVY (calculated)
-0.389
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTSRLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EVSAKSNYNF EKPFLYLARK LAGDGNLHFV ETPALAPPDV TIDLAAQQQH
201: EAELAAAAAQ PLPDDDDDLI E
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EVSAKSNYNF EKPFLYLARK LAGDGNLHFV ETPALAPPDV TIDLAAQQQH
201: EAELAAAAAQ PLPDDDDDLI E
001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E
Arabidopsis Description
RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.