CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84862
CDX86496
CDY06679
CDY09935
CDY10250
CDY15604
CDY24034
CDY26790
CDY26791
CDY59068

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20010.1	CDX86496	AT1G07140.1	9025305
AT5G20010.1	CDY06679	AT1G07140.1	9025305
AT5G20010.1	CDY09935	AT1G07140.1	9025305
AT5G20010.1	CDY10250	AT1G07140.1	9025305
AT5G20010.1	CDY15604	AT1G07140.1	9025305
AT5G20010.1	CDY59068	AT1G07140.1	9025305
AT5G20010.1	CDY26790	AT2G16950.1	14756317
AT5G20010.1	CDY26791	AT2G16950.1	14756317
AT5G20010.1	CDX84862	AT2G30060.1	9025305
AT5G20010.1	CDY24034	AT2G30060.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G20010.1	Thale cress	cytosol	89.45	95.93
VIT_09s0002g05940.t01	Wine grape	cytosol	89.03	95.48
CDY19907	Canola	cytosol	88.19	93.3
Os01t0611100-01	Rice	plastid	86.92	93.21
Zm00001d044054_P002	Maize	cytosol	85.65	91.86
Zm00001d011474_P001	Maize	cytosol, plastid	85.65	91.86
KXG32999	Sorghum	cytosol	85.65	91.86
EES01060	Sorghum	cytosol	84.39	90.91
CDY06600	Canola	cytosol	89.87	85.89
Zm00001d039091_P002	Maize	cytosol	85.23	85.59
Zm00001d011328_P001	Maize	cytosol	46.84	85.38
CDY20779	Canola	vacuole	88.61	82.68
TraesCS7B01G254000.2	Wheat	cytosol	76.79	81.61
CDY17309	Canola	plastid	88.61	81.08
Zm00001d039090_P001	Maize	cytosol	85.23	79.84
KXG22580	Sorghum	cytosol, nucleus	31.65	78.95
CDY61737	Canola	cytosol, mitochondrion, nucleus	21.1	74.63
VIT_04s0008g05030.t01	Wine grape	cytosol	88.61	68.85
TraesCS7D01G155200.2	Wheat	plastid	24.89	29.95

Protein Annotations

MapMan:23.5.1.4	Gene3D:3.40.50.300	GO:A0A078C3X6	EnsemblPlants:CDX70904	ProteinID:CDX70904	ProteinID:CDX70904.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0005886	GO:GO:0006810	GO:GO:0006913
GO:GO:0006950	GO:GO:0008150	GO:GO:0009628	GO:GO:0009651	GO:GO:0015031	GO:GO:0016020
GO:GO:0016787	GO:GO:0030312	GO:GO:0046686	GO:GO:0048046	EnsemblPlantsGene:GSBRNA2T00140811001	InterPro:IPR002041
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00627	PFscan:PS51418	PANTHER:PTHR24071	PANTHER:PTHR24071:SF7
InterPro:Ran_GTPase	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EE145E	SEG:seg	:

Description

BnaC03g09880D

Coordinates

chrLK031791:+:2652015..2653624

Molecular Weight (calculated)

26913.8 Da

IEP (calculated)

5.895

GRAVY (calculated)

-0.477

Length

237 amino acids

Sequence
(BLAST)

001: MNQDVVTNTD SLDSDNMALP NQQTVDYPSF KLVIVGDGGT GKTTFVKRHL TGEFEKKYEP TIGVEVHPLD FFTNCGKIRF YCWDTAGQEK FGGLRDGYYI
101: HGQCAVIMFD VTARLTYKNV PTWHRDLCRV CENIPIVLCG NKVDVKNRQV KAKQVTFHRK KNLQYYEISA KSNYNFEKPF LYLARKLAGD QNLHFVESPA
201: LAPPEVHIDV AEQQRNEADL IAAAAQPLPD DDDDAFE

Best Arabidopsis Sequence Match ( AT5G20020.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDQNLHFV ESPALAPPEV HLDIAAQQQN
201: EADLAAAAAQ PLPDDDDDAF E

Arabidopsis Description

RAN2GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UQ77]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.