CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX90262
CDX94304
CDX97358
CDY12068
CDY15876
CDY26774
CDY28290
CDY44519
CDY52543
CDY59109
CDY59110
CDY59111
CDY59763
CDY70933
CDY71694
CDY72366

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16950.1	CDY15876	AT2G21660.1	14756317
AT2G16950.1	CDY59763	AT2G21660.1	14756317
AT2G16950.1	CDY70933	AT2G21660.1	14756317
AT2G16950.1	CDY72366	AT2G21660.1	14756317
AT2G16950.1	CDX90262	AT4G14300.1	14756317
AT2G16950.1	CDY12068	AT4G14300.1	14756317
AT2G16950.1	CDX89318	AT4G26630.1	25387881
AT2G16950.1	CDX94304	AT4G26630.1	25387881
AT2G16950.1	CDX97358	AT4G26630.1	25387881
AT2G16950.1	CDY26774	AT5G27080.1	20706207
AT2G16950.1	CDY28290	AT5G27080.1	20706207
AT2G16950.1	CDY44519	AT5G27080.1	20706207
AT2G16950.1	CDY52543	AT5G27080.1	20706207
AT2G16950.1	CDY59109	AT5G27080.1	20706207
AT2G16950.1	CDY59110	AT5G27080.1	20706207
AT2G16950.1	CDY59111	AT5G27080.1	20706207
AT2G16950.1	CDY71694	AT5G27080.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G16953.1	Thale cress	cytosol	19.53	39.06
GSMUA_Achr4P16360_001	Banana	cytosol	64.84	15.75
CDY47482	Canola	cytosol	96.09	13.93
CDY31391	Canola	cytosol	92.19	13.38
CDX89768	Canola	cytosol	90.62	13.26
CDY02225	Canola	cytosol	89.84	13.04
AT2G16950.1	Thale cress	cytosol	90.62	12.96
KRH36099	Soybean	cytosol	72.66	10.41
KRG90653	Soybean	cytosol	72.66	10.38
VIT_03s0038g02830.t01	Wine grape	cytosol	69.53	9.93
CDY54431	Canola	cytosol	90.62	9.71
Solyc01g111780.2.1	Tomato	nucleus, plastid	67.19	9.66
HORVU2Hr1G126610.7	Barley	cytosol	65.62	9.5
TraesCS2A01G562500.1	Wheat	golgi	65.62	9.36
TraesCS2B01G624100.1	Wheat	cytosol	65.62	9.36
TraesCS2D01G572700.1	Wheat	cytosol	65.62	9.36
EES11709	Sorghum	cytosol	62.5	9.0
Zm00001d026696_P005	Maize	cytosol	62.5	8.99
Zm00001d002936_P010	Maize	cytosol	62.5	8.98
Os04t0691600-02	Rice	plastid	8.59	7.59
CDY26790	Canola	cytosol	3.12	3.39
CDY35657	Canola	cytosol	16.41	2.42
CDY14379	Canola	cytosol	16.41	2.42
CDX99262	Canola	cytosol	8.59	2.4
CDY53085	Canola	cytosol	12.5	1.83
CDY44668	Canola	cytosol	12.5	1.83
Bra010184.1-P	Field mustard	cytosol, mitochondrion	3.91	1.64
TraesCS3A01G329100.1	Wheat	cytosol, mitochondrion	10.16	1.33
Os04t0691500-01	Rice	cytosol, plasma membrane	7.03	1.17
CDY71774	Canola	cytosol	2.34	1.06
CDY28068	Canola	cytosol	3.91	1.03
TraesCS2B01G426000.1	Wheat	cytosol	2.34	0.82

Protein Annotations

EnsemblPlants:CDY26791	EnsemblPlantsGene:GSBRNA2T00035726001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR011989	PANTHER:PTHR10527	PANTHER:PTHR10527:SF3	ProteinID:CDY26791	ProteinID:CDY26791.1
SUPFAM:SSF48371	UniParc:UPI0004EDCF97	UniProt:A0A078GN71	MapMan:23.5.1.2.2	:	:

Description

BnaC09g09180DBnaC09g09180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GN71]

Coordinates

chrLK032194:+:248093..249287

Molecular Weight (calculated)

14418.4 Da

IEP (calculated)

5.656

GRAVY (calculated)

-0.054

Length

128 amino acids

Sequence
(BLAST)

001: MPESINFENS AITLGRLAWI RPDLVAPHME HFMKPWCLAL AMVRDDLEKE DAFRGLCAVV KVNPSGGVSS LVFICKAIAS WHEIRSEDVN SEVSQVLNGY
101: KQMLGNSWAE CWSALDPPVK ERLARYQV

Best Arabidopsis Sequence Match ( AT2G16950.1 )
(BLAST)

001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAVIWQAL YNSLDKYLQG LFVLANDPVP EVRKLVCAAF VHLTEVLPSS IEPHLRNVME YMLQVNRDPD EEVSLEACEF WSAYCDAQLP
301: PENLKEFLPR LIPVLLENMA YADDDESLLD AEEDESQPDR DQDLKPRFHT SRLHGSEDFD DDDDDSFNVW NLRKCSAAAI DVLSNVFGDE ILPALMPLIQ
401: KNLSASGDEA WKQREAAVLA LGAIAEGCMN GLYPHLSEIV AFLLPLLDDK FPLIRSISCW TLSRFGKYLI QESGNPKGYE QFEKVLMGLL RRLLDTNKRV
501: QEAACSAFAT VEEDAAEELV PHLGVILQHL MCAFGKYQRR NLRIVYDAIG TLADSVREEL NKPAYLEILM PPLVAKWQQL SNSDKDLFPL LECFTSISQA
601: LGVGFAPFAQ PVFQRCMDII QLQQLAKVNP ASAGAQYDRE FIVCSLDLLS GLAEGLGSGI ESLVQQSNLR DLLLNCCIDE AADVRQSAFA LMGDLARVFP
701: VYLQPRLLDF LEIASQQLSA NLNRENLSVA NNACWAIGEL AVKVRQEVSP IVAKVVSSLG LILQHGEGVN KALVENSAIT LGRLAWIRPD LVAPHMDHFM
801: KPWCMALSMV RDDIEKEDAF RGLCAVVKVN PSGGVSSLVF ICQAIASWHE IRSEDVQTEV SQVLNGYKHM LGNSWAECLS ALDPPVKERL ARYQV

Arabidopsis Description

TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.