CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73850
CDX74120
CDX82264
CDY01062
CDY08491
CDY18835
CDY24564
CDY25374
CDY33444
CDY35917
CDY36063
CDY40468
CDY42227
CDY49990
CDY53919
CDY67306

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26900.1	CDY35917	AT2G20000.1	17944809
AT5G26900.1	CDY40468	AT2G20000.1	17944809
AT5G27080.1	CDX73850	AT3G11830.1	20706207
AT5G27080.1	CDY01062	AT3G11830.1	20706207
AT5G27080.1	CDY08491	AT3G11830.1	20706207
AT5G27080.1	CDY53919	AT3G11830.1	20706207
AT5G27080.1	CDY67306	AT3G11830.1	20706207
AT5G27080.1	CDX82264	AT3G20050.1	20706207
AT5G27080.1	CDY24564	AT3G20050.1	20706207
AT5G27080.1	CDY25374	AT3G20050.1	20706207
AT5G27080.1	CDY33444	AT3G20050.1	20706207
AT5G27080.1	CDY36063	AT3G20050.1	20706207
AT5G27080.1	CDY42227	AT3G20050.1	20706207
AT5G27080.1	CDX74120	AT5G26360.1	20706207
AT5G27080.1	CDY18835	AT5G26360.1	20706207
AT5G27080.1	CDY49990	AT5G26360.1	20706207
AT5G27570.1	CDY35917	AT2G20000.1	17944809
AT5G27570.1	CDY40468	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07005	Soybean	nucleus	30.14	35.48
CDX75343	Canola	nucleus	60.96	23.86
CDX68960	Canola	nucleus	60.96	21.55
CDY13491	Canola	cytosol	41.78	16.58
AT5G27570.1	Thale cress	nucleus	47.95	15.56
CDY59110	Canola	nucleus	44.52	15.51
CDY59109	Canola	nucleus	44.52	15.51
CDY52543	Canola	nucleus	45.21	15.42
KRH68047	Soybean	nucleus	47.26	15.1
AT5G26900.1	Thale cress	nucleus	45.21	14.86
Solyc08g005420.2.1	Tomato	nucleus	45.21	14.73
PGSC0003DMT400047585	Potato	nucleus	45.21	14.73
AT5G27080.1	Thale cress	nucleus	44.52	14.71
CDY46124	Canola	cytosol	59.59	14.03
KRH44738	Soybean	nucleus	42.47	14.03
CDY71640	Canola	nucleus, plastid	21.23	12.92
GSMUA_AchrUn_...	Banana	cytosol	23.97	12.24
CDY44519	Canola	cytosol, nucleus	39.73	11.18
GSMUA_Achr1P28050_001	Banana	cytosol	23.97	8.6
GSMUA_AchrUn_...	Banana	nucleus	23.97	8.52
CDX94136	Canola	nucleus, plastid	21.23	8.12
GSMUA_Achr3P21370_001	Banana	cytosol	21.92	8.06
GSMUA_AchrUn_...	Banana	cytosol	18.49	7.42
CDX70523	Canola	plastid	21.92	6.84
CDX78541	Canola	plastid	21.92	6.84
CDY51550	Canola	nucleus	21.23	6.83
CDY10820	Canola	nucleus, plastid	21.92	6.81
CDY41283	Canola	nucleus, plastid	21.92	6.79
CDX90811	Canola	nucleus	20.55	6.62
CDX94473	Canola	nucleus	20.55	6.36
CDX86737	Canola	nucleus	20.55	6.32
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	8.22	6.22
CDX98239	Canola	nucleus	3.42	3.73
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	9.59	3.27
CDY04804	Canola	mitochondrion, plastid	3.42	3.12
KRG94456	Soybean	cytosol	4.79	2.98
CDY71694	Canola	nucleus	1.37	1.16
GSMUA_Achr1P25940_001	Banana	cytosol	0.68	0.34
GSMUA_Achr1P27670_001	Banana	cytosol	0.0	0.0
GSMUA_Achr1P27660_001	Banana	mitochondrion	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0
CDY71065	Canola	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0
CDX75342	Canola	cytosol	0.0	0.0
CDY59111	Canola	nucleus	0.0	0.0
CDY26774	Canola	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:CDY28290	EnsemblPlantsGene:GSBRNA2T00040033001	GO:GO:0003674	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0051488
GO:GO:0097027	GO:GO:1904668	InterPro:Cdc20/Fizzy	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	ProteinID:CDY28290
ProteinID:CDY28290.1	UniParc:UPI0004EF3D42	UniProt:A0A078GNZ8	MapMan:35.1	:	:

Description

BnaC03g66690DBnaC03g66690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNZ8]

Coordinates

chrLK032217:-:147251..147843

Molecular Weight (calculated)

16809.9 Da

IEP (calculated)

7.213

GRAVY (calculated)

-0.651

Length

146 amino acids

Sequence
(BLAST)

001: MDAGINTSSH LKAQARCPLR EHFLPRKNSK ENLDRFIPNR SAMDFDYAHF ALTEGRNGKD QEETAVSSPS REAYRKQLAE TMNLNHTRIL AFRNKPKDPA
101: QLLPTDHSAS SLHQQQLVRI YFLLYCIDPT LDAPDIVDDF YLNLLH

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.