CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04804	Canola	mitochondrion, plastid	48.54	31.25
CDY59111	Canola	nucleus	54.37	25.93
CDY71694	Canola	nucleus	35.92	21.39
CDY10820	Canola	nucleus, plastid	96.12	21.06
CDY41283	Canola	nucleus, plastid	96.12	21.02
CDX90811	Canola	nucleus	88.35	20.09
CDY51550	Canola	nucleus	88.35	20.04
CDX94473	Canola	nucleus	88.35	19.28
CDX86737	Canola	nucleus	86.41	18.74
CDX70523	Canola	plastid	79.61	17.52
CDX78541	Canola	plastid	79.61	17.52
CDY13491	Canola	cytosol	56.31	15.76
CDX75343	Canola	nucleus	45.63	12.6
CDX68960	Canola	nucleus	45.63	11.38
CDY52543	Canola	nucleus	44.66	10.75
CDY59109	Canola	nucleus	40.78	10.02
CDY59110	Canola	nucleus	40.78	10.02
CDY26774	Canola	mitochondrion	10.68	10.0
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	18.45	9.84
CDY44519	Canola	cytosol, nucleus	46.6	9.25
CDY46124	Canola	cytosol	44.66	7.42
CDX98239	Canola	nucleus	6.8	5.22
CDX94136	Canola	nucleus, plastid	9.71	2.62
CDY71640	Canola	nucleus, plastid	1.94	0.83
CDY28290	Canola	cytosol, mitochondrion, nucleus	0.0	0.0
CDX75342	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078JXA7	EnsemblPlants:CDY71065	ProteinID:CDY71065	ProteinID:CDY71065.1
InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0051488
GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSBRNA2T00010962001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF31
InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI0004EEF467	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	:	:	:	:

Description

BnaCnng71150DBnaCnng71150D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JXA7]

Coordinates

chrLK044321:-:1313..2871

Molecular Weight (calculated)

11376.3 Da

IEP (calculated)

8.472

GRAVY (calculated)

-0.280

Length

103 amino acids

Sequence
(BLAST)

001: SSIDTGSQVC NLAWSKNVNE LVSTHGYSQN QIIVWKYPTM SKVATLTGHT YRVLYLAVSP DGQTIVTGAG DETLRFWNVF PSPKSQNTDS EIGSTFFGRT
101: TIR

Best Arabidopsis Sequence Match ( AT4G11920.1 )
(BLAST)

001: MEEDESTTPK KKSDSQLNLP PSMNRPTVSL ESRINRLIDS NHYHSPSKPI YSDRFIPSRS GSNFALFDLA SSSPNKKDGK EDGAGSYASL LKTALFGPVT
101: PEKSDVVNGF SPSGNIFRFK TETQRSLNLY PPFDSDVVSG VSPSPVKSPR KILRSPYKVL DAPALQDDFY LNLVDWSAQN VLAVGLGNCV YLWNACSSKV
201: TKLCDLGVDE TVCSVGWALR GTHLAIGTSS GTVQIWDVLR CKNIRTMEGH RLRVGALAWS SSVLSSGSRD KSILQRDIRT QEDHVSKLKG HKSEICGLKW
301: SSDNRELASG GNDNKLFVWN QHSTQPVLRF CEHAAAVKAI AWSPHHFGLL ASGGGTADRC IRFWNTTTNT HLNCVDTNSQ VCNLVWSKNV NELVSTHGYS
401: QNQIIVWKYP TMSKLATLTG HSYRVLYLAV SPDGQTIVTG AGDETLRFWN VFPSPKSQSR ESEIGALSFG RTTIR

Arabidopsis Description

FZR1Protein FIZZY-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.