CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71065	Canola	cytosol	31.25	48.54
CDY59111	Canola	nucleus	27.5	20.37
CDY71694	Canola	nucleus	21.88	20.23
CDY26774	Canola	mitochondrion	11.88	17.27
CDY10820	Canola	nucleus, plastid	47.5	16.17
CDY41283	Canola	nucleus, plastid	47.5	16.14
CDX90811	Canola	nucleus	45.0	15.89
CDY51550	Canola	nucleus	45.0	15.86
GSMUA_Achr5P07090_001	Banana	plastid	43.75	15.42
CDX94473	Canola	nucleus	45.0	15.25
CDX86737	Canola	nucleus	44.38	14.95
CDX78541	Canola	plastid	42.5	14.53
CDX70523	Canola	plastid	42.5	14.53
Os01t0972900-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	43.12	14.44
EES02145	Sorghum	plastid	42.5	14.11
Zm00001d041957_P004	Maize	plastid	41.88	13.81
TraesCS3B01G595600.1	Wheat	plastid	41.88	13.81
TraesCS3A01G527600.1	Wheat	plastid	41.88	13.76
TraesCS3D01G533000.1	Wheat	plastid	41.25	13.66
CDY13491	Canola	cytosol	30.62	13.32
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	15.62	12.95
CDX75343	Canola	nucleus	29.38	12.6
CDY52543	Canola	nucleus	33.12	12.38
CDY59109	Canola	nucleus	31.25	11.93
CDY59110	Canola	nucleus	31.25	11.93
CDX68960	Canola	nucleus	30.0	11.62
HORVU3Hr1G115170.1	Barley	cytosol, mitochondrion, nucleus, plastid	42.5	11.58
CDY44519	Canola	cytosol, nucleus	31.88	9.83
CDY46124	Canola	cytosol	28.75	7.42
CDX94136	Canola	nucleus, plastid	17.5	7.33
CDX98239	Canola	nucleus	5.62	6.72
CDY71640	Canola	nucleus, plastid	5.62	3.75
CDY28290	Canola	cytosol, mitochondrion, nucleus	3.12	3.42
Os01t0973000-01	Rice	cytosol	0.62	0.36
CDX75342	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDY04804	ProteinID:CDY04804	ProteinID:CDY04804.1	InterPro:Cdc20/Fizzy
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0051488	GO:GO:0097027
GO:GO:1904668	EnsemblPlantsGene:GSBRNA2T00119503001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF31	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF47CD
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

BnaC05g17850D

Coordinates

chrLK031957:+:910864..912362

Molecular Weight (calculated)

18153.0 Da

IEP (calculated)

9.585

GRAVY (calculated)

0.124

Length

160 amino acids

Sequence
(BLAST)

001: MAFRTVKSSG KAPPLSSSVT SLRGLERLNC DFCYALLGSK LFGFVLHSKA IAWSPYVNDL ASGDWTLIDA YAIFNPKVKF LFFLTYGCSH NQIIYWIYLT
101: ISKIATLTCH AYRVMYVAVS PDGKTIVTRA RDETLRFWNV FPSMKTQNEA LWLGENSMPR

Best Arabidopsis Sequence Match ( AT4G22910.1 )
(BLAST)

001: MEEEDPTASN VITNSNSSSM RNLSPAMNTP VVSLESRINR LINANQSQSP SPSSLSRSIY SDRFIPSRSG SNFALFDLSP SPSKDGKEDG AGSYATLLRA
101: AMFGPETPEK RDITGFSSSR NIFRFKTETH RSLNSFSPFG VDDDSPGVSH SGPVKAPRKV PRSPYKVLDA PALQDDFYLN LVDWSAQNVL AVGLGNCVYL
201: WNACSSKVTK LCDLGAEDSV CSVGWALRGT HLAVGTSTGK VQIWDASRCK RTRTMEGHRL RVGALAWGSS VLSSGSRDKS ILQRDIRCQE DHVSKLAGHK
301: SEVCGLKWSY DNRELASGGN DNRLFVWNQH STQPVLKYSE HTAAVKAIAW SPHVHGLLAS GGGTADRCIR FWNTTTNTHL SSIDTCSQVC NLAWSKNVNE
401: LVSTHGYSQN QIIVWKYPTM SKIATLTGHT YRVLYLAVSP DGQTIVTGAG DETLRFWNVF PSPKSQNTDS EIGSSFFGRT TIR

Arabidopsis Description

FZR2FZR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.