Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70523 | Canola | plastid | 1.78 | 1.07 |
| CDX78541 | Canola | plastid | 1.78 | 1.07 |
| Os01t0972900-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 1.78 | 1.05 |
| EES02145 | Sorghum | plastid | 1.78 | 1.04 |
| Bra006219.1-P | Field mustard | plastid | 1.78 | 1.03 |
| GSMUA_Achr5P07090_001 | Banana | plastid | 1.42 | 0.88 |
| Os09t0242300-00 | Rice | plastid | 1.42 | 0.84 |
| AT5G13840.1 | Thale cress | plastid | 1.42 | 0.83 |
| TraesCS3D01G533000.1 | Wheat | plastid | 1.42 | 0.83 |
| Zm00001d041957_P004 | Maize | plastid | 1.42 | 0.82 |
| TraesCS3B01G595600.1 | Wheat | plastid | 1.42 | 0.82 |
| TraesCS3A01G527600.1 | Wheat | plastid | 1.42 | 0.82 |
| KRG97899 | Soybean | plastid | 1.42 | 0.82 |
| KRH30985 | Soybean | plastid | 1.42 | 0.8 |
| HORVU3Hr1G115170.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 1.42 | 0.68 |
| Os02t0700100-01 | Rice | extracellular | 1.07 | 0.64 |
| VIT_13s0019g01840.t01 | Wine grape | plastid | 1.07 | 0.64 |
| CDY04804 | Canola | mitochondrion, plastid | 0.36 | 0.62 |
| Solyc06g043150.2.1 | Tomato | nucleus, plastid | 0.71 | 0.4 |
| PGSC0003DMT400076326 | Potato | nucleus, plastid | 0.71 | 0.4 |
| Os04t0599800-01 | Rice | nucleus | 0.71 | 0.4 |
| Os03t0123300-01 | Rice | plastid | 0.71 | 0.38 |
Protein Annotations
| MapMan:35.2 | EntrezGene:4326398 | EMBL:AK103593 | ProteinID:BAD87372.1 | ProteinID:BAD87416.1 | ProteinID:BAF07458.1 |
| ProteinID:BAS76440.1 | ProteinID:EEE56094.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016787 | InterPro:HAD-SF_hydro_IA | InterPro:HAD-like_sf | EnsemblPlantsGene:Os01g0973000 | EnsemblPlants:Os01t0973000-01 | PANTHER:PTHR12725 |
| PANTHER:PTHR12725:SF71 | InterPro:Pyr-5-nucltdase | UniProt:Q5JM91 | SUPFAM:SSF56784 | TIGRFAMs:TIGR01509 | TIGRFAMs:TIGR01993 |
| UniParc:UPI00004C2966 | RefSeq:XP_015629596.1 | : | : | : | : |
Description
HAD-superfamily hydrolase, subfamily IA, variant 3 domain containing protein. (Os01t0973000-01)
Coordinates
chr1:+:42954163..42956626
Molecular Weight (calculated)
31276.7 Da
IEP (calculated)
5.417
GRAVY (calculated)
-0.133
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MECESNYSKE QRLNGDSLVF DLDDTLYPVT SGIGADVVRN IQAYMIEKLG VEESISLELC VLLYKQYGTT MAGLRAVGYQ FDYDDFHSYV HGRLAYEKIK
101: PDPVLRNILL SLPIRKVVFT NGDRIHASRA LKRLGIEDCF ERVVCFETLN PTSSSLSAAG QVEIFDIMKH LAHPEPGVEL PKSPILCKPN IDAMRQALKV
201: ASINPKTSIL FDDSARNIQA AKLIGMYTVL VGTSERIKGA DHALESLHNM KEALPELWDE AVKDEDVRKS SKVGIETSVI A
101: PDPVLRNILL SLPIRKVVFT NGDRIHASRA LKRLGIEDCF ERVVCFETLN PTSSSLSAAG QVEIFDIMKH LAHPEPGVEL PKSPILCKPN IDAMRQALKV
201: ASINPKTSIL FDDSARNIQA AKLIGMYTVL VGTSERIKGA DHALESLHNM KEALPELWDE AVKDEDVRKS SKVGIETSVI A
001: MAYEEHFQQT SEAKYDCLLF DIDDTLYPLS SGLAMEVKKN IQEYMVQKLG IEEDKVQELC LSLYKIYGTT MAGLKAVGYD FDYDDFHRFV HGRLPYSTLK
101: PDPILRNIIL SLPIRKVVFT NADKAHAAKI IARLGLEGCF EKIISFETLN PITKTESPVD TKTREIFDII SYMANPDSSI ELPKTSVVCK PSEGAFEQVF
201: KMANINPKKT LFFDDSIRNI QTGKRVGLHT VWVGTSHREE GVDIALEHIH NIREALPQLW DAVDDKAKEI RTRQKVAIET IA
101: PDPILRNIIL SLPIRKVVFT NADKAHAAKI IARLGLEGCF EKIISFETLN PITKTESPVD TKTREIFDII SYMANPDSSI ELPKTSVVCK PSEGAFEQVF
201: KMANINPKKT LFFDDSIRNI QTGKRVGLHT VWVGTSHREE GVDIALEHIH NIREALPQLW DAVDDKAKEI RTRQKVAIET IA
Arabidopsis Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LTI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.