Factsheet for Os03t0123300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0611000-01
Os01t0836600-01
Os02t0123300-00
Os02t0130000-01
Os02t0205200-01
Os02t0247200-01
Os02t0527500-00
Os02t0656300-01
Os02t0785900-00
Os03t0146300-01
Os03t0236966-00
Os03t0278300-02
Os03t0281900-01
Os03t0282100-00
Os03t0328501-00
Os03t0649000-01
Os04t0105000-01
Os04t0443300-00
Os04t0484800-01
Os04t0485000-01
Os04t0494600-01
Os04t0494800-01
Os04t0494900-01
Os04t0494950-01
Os04t0495000-00
Os04t0551800-01
Os04t0563700-01	endoplasmic reticulum
Os05t0120000-00
Os05t0120200-01
Os05t0149900-01
Os05t0579800-01
Os06t0538000-01
Os06t0622500-00
Os06t0679100-00
Os06t0687700-01
Os06t0726800-01	endoplasmic reticulum
Os07t0124500-01
Os07t0132600-00
Os07t0237100-00
Os11t0100200-00
Os12t0100100-01
Os12t0620600-01
Os12t0626300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11920.1	Os12t0626300-01	AT1G06590.1	20706207
AT4G11920.1	Os04t0563700-01	AT1G20610.1	20407024
AT4G11920.1	Os06t0726800-01	AT1G20610.1	20407024
AT4G11920.1	Os02t0130000-01	AT1G31760.1	20706207
AT4G11920.1	Os03t0236966-00	AT1G78770.1	20706207
AT4G11920.1	Os04t0484800-01	AT2G04660.1	20706207
AT4G11920.1	Os05t0579800-01	AT2G18290.1	20706207
AT4G11920.1	Os06t0622500-00	AT2G20000.1	17944809
AT4G11920.1	Os06t0622500-00	AT2G20000.1	20706207
AT4G11920.1	Os03t0146300-01	AT2G27970.1	20706207
AT4G11920.1	Os05t0149900-01	AT2G39090.1	20706207
AT4G11920.1	Os03t0649000-01	AT3G11760.1	20706207
AT4G11920.1	Os12t0620600-01	AT3G11760.1	20706207
AT4G11920.1	Os04t0551800-01	AT3G20050.1	20706207
AT4G11920.1	Os02t0656300-01	AT3G48150.1	20706207
AT4G11920.1	Os06t0679100-00	AT3G48150.1	20706207
AT4G11920.1	Os01t0836600-01	AT3G55130.1	20706207
AT4G11920.1	Os03t0281900-01	AT3G55130.1	20706207
AT4G11920.1	Os03t0282100-00	AT3G55130.1	20706207
AT4G11920.1	Os05t0120000-00	AT3G55130.1	20706207
AT4G11920.1	Os05t0120200-01	AT3G55130.1	20706207
AT4G11920.1	Os02t0785900-00	AT4G21530.1	20706207
AT4G11920.1	Os04t0485000-01	AT4G24820.1	20706207
AT4G11920.1	Os03t0278300-02	AT5G02530.1	20706207
AT4G11920.1	Os07t0237100-00	AT5G02530.1	20706207
AT4G11920.1	Os11t0100200-00	AT5G02530.1	20706207
AT4G11920.1	Os12t0100100-01	AT5G02530.1	20706207
AT4G11920.1	Os01t0611000-01	AT5G25460.1	20706207
AT4G11920.1	Os02t0205200-01	AT5G25460.1	20706207
AT4G11920.1	Os02t0527500-00	AT5G25460.1	20706207
AT4G11920.1	Os03t0328501-00	AT5G25460.1	20706207
AT4G11920.1	Os04t0494600-01	AT5G25460.1	20706207
AT4G11920.1	Os04t0494800-01	AT5G25460.1	20706207
AT4G11920.1	Os04t0494900-01	AT5G25460.1	20706207
AT4G11920.1	Os04t0494950-01	AT5G25460.1	20706207
AT4G11920.1	Os04t0495000-00	AT5G25460.1	20706207
AT4G11920.1	Os07t0132600-00	AT5G25460.1	20706207
AT4G11920.1	Os02t0247200-01	AT5G26360.1	20706207
AT4G11920.1	Os06t0538000-01	AT5G26360.1	20706207
AT4G22910.1	Os12t0626300-01	AT1G06590.1	20706207
AT4G22910.1	Os04t0443300-00	AT1G71380.1	20706207
AT4G22910.1	Os04t0484800-01	AT2G04660.1	20706207
AT4G22910.1	Os06t0622500-00	AT2G20000.1	17944809
AT4G22910.1	Os06t0622500-00	AT2G20000.1	20706207
AT4G22910.1	Os04t0105000-01	AT2G28450.1	20706207
AT4G22910.1	Os05t0149900-01	AT2G39090.1	20706207
AT4G22910.1	Os06t0687700-01	AT3G11830.1	20706207
AT4G22910.1	Os04t0551800-01	AT3G20050.1	20706207
AT4G22910.1	Os02t0656300-01	AT3G48150.1	20706207
AT4G22910.1	Os06t0679100-00	AT3G48150.1	20706207
AT4G22910.1	Os02t0123300-00	AT3G56150.1	20706207
AT4G22910.1	Os07t0124500-01	AT3G56150.1	20706207
AT4G22910.1	Os02t0785900-00	AT4G21530.1	20706207
AT4G22910.1	Os04t0485000-01	AT4G24820.1	20706207
AT4G22910.1	Os03t0278300-02	AT5G02530.1	20706207
AT4G22910.1	Os07t0237100-00	AT5G02530.1	20706207
AT4G22910.1	Os11t0100200-00	AT5G02530.1	20706207
AT4G22910.1	Os12t0100100-01	AT5G02530.1	20706207
AT4G22910.1	Os02t0247200-01	AT5G26360.1	20706207
AT4G22910.1	Os06t0538000-01	AT5G26360.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027430_P001	Maize	plastid	83.94	85.41
Zm00001d048472_P001	Maize	nucleus, plastid	84.89	85.38
TraesCS4D01G341200.1	Wheat	nucleus, plastid	81.45	83.2
TraesCS4B01G346200.2	Wheat	nucleus, plastid	80.69	82.26
TraesCS1B01G166800.1	Wheat	cytosol	61.57	76.12
HORVU4Hr1G084710.1	Barley	cytosol, mitochondrion	81.07	75.31
TraesCS7B01G353500.1	Wheat	plastid	57.94	74.81
VIT_02s0025g04680.t01	Wine grape	cytosol, nucleus, plastid	64.24	74.34
GSMUA_Achr11P...	Banana	plastid	67.88	73.05
KRH57275	Soybean	nucleus	64.05	72.98
KRH77460	Soybean	nucleus, plastid	61.95	70.59
CDY10820	Canola	nucleus, plastid	63.1	70.21
Bra019347.1-P	Field mustard	nucleus, plastid	63.1	70.21
CDY41283	Canola	nucleus, plastid	63.1	70.06
Bra013655.1-P	Field mustard	nucleus, plastid	63.1	70.06
PGSC0003DMT400058525	Potato	nucleus, plastid	63.48	69.46
AT4G22910.1	Thale cress	nucleus, plastid	64.05	69.36
AT4G11920.1	Thale cress	nucleus	62.72	69.05
Solyc08g080080.2.1	Tomato	nucleus, plastid	63.48	69.02
GSMUA_Achr11P...	Banana	plastid	63.67	67.82
CDX94473	Canola	nucleus	61.19	67.8
Bra029426.1-P	Field mustard	nucleus	61.19	67.37
CDX86737	Canola	nucleus	61.19	67.37
CDY51550	Canola	nucleus	58.13	66.96
Solyc12g056490.1.1	Tomato	nucleus, plastid	61.57	66.94
Bra000756.1-P	Field mustard	nucleus	59.85	66.6
CDX90811	Canola	nucleus	56.79	65.56
PGSC0003DMT400027994	Potato	nucleus, plastid	60.8	65.43
OQU93351	Sorghum	nucleus	86.42	64.94
CDX94136	Canola	nucleus, plastid	47.23	64.66
KRH04001	Soybean	mitochondrion	64.63	64.26
KRH27985	Soybean	nucleus, plastid	52.96	61.01
Os01t0972900-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	54.49	59.62
CDY71640	Canola	nucleus, plastid	24.47	53.33
Os02t0700100-01	Rice	extracellular	35.56	39.66
Os04t0599800-01	Rice	nucleus	36.14	37.5
Os09t0242300-00	Rice	plastid	33.27	36.4
Os01t0973000-01	Rice	cytosol	0.38	0.71

Protein Annotations

MapMan:13.3.4.1.3	Gene3D:2.130.10.10	EntrezGene:4331448	ProteinID:ABF93719.1	EMBL:AK070642	InterPro:Apc4_WD40_dom
ProteinID:BAF10718.1	ProteinID:BAS82049.1	ProteinID:BAS82050.1	InterPro:Cdc20/Fizzy	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006259	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009825	GO:GO:0009987
GO:GO:0010091	GO:GO:0010997	GO:GO:0016043	GO:GO:0016049	GO:GO:0019538	GO:GO:0030154
GO:GO:0030234	GO:GO:0040007	GO:GO:0042023	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os03g0123300	EnsemblPlants:Os03t0123300-01	PFAM:PF00400	PFAM:PF12894
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF31	UniProt:Q10SH0
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0000DB483C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015627938.1	RefSeq:XP_015627939.1	SEG:seg	:

Description

TILLERING AND DWARF 1Activator of the anaphase promoting complex/cyclosome (APC/C) complex, Regulation of cell cycle, Regulation of postembryonic shoot branching and tillering, Maintenance of endoreduplication during endosperm development (Os03t0123300-01);Similar to Cell cycle switch protein CCS52A. (Os03t0123300-02)

Coordinates

chr3:+:1327450..1331022

Molecular Weight (calculated)

56042.6 Da

IEP (calculated)

9.444

GRAVY (calculated)

-0.333

Length

523 amino acids

Sequence
(BLAST)

001: MDHHHHHLPP PPPRSPMENS ASSKPPTPAS TPSSRLAAAP SSRVSSAAPH PSPSSSAPTP ASRTVYSDRF IPSRAGSNLA LFDLAPSPSH HDAAAAAASP
101: GAPPPSGSTP ASSPYCALLR AALFGPTTPD RVASSASACS SSSSAGASPV GSPATGNIFR FKAEVPRNAK RALFSDGDDE GVLFPGVFTT RGTGPRKIPR
201: SPYKVLDAPA LQDDFYLNLV DWSSHNILAV GLGNCVYLWN ACSSKVTKLC DLGVDDNVCS VGWAQRGTHL AVGTNQGKVQ VWDATRCKRI RTMESHRMRV
301: GALAWNSSLL SSGSRDKSIL HHDIRAQDDY ISRLAGHKSE VCGLKWSYDN RQLASGGNDN RLYVWNQHSA HPVLKYTEHT AAVKAIAWSP HLHGLLASGG
401: GTADRCIRFW NTTTNMHLNC VDTGSQVCNL VWSKNVNELV STHGYSQNQI IVWRYPTMSK LATLTGHTYR VLYLAISPDG QTIVTGAGDE TLRFWNVFPS
501: PKSQSSDSLS SIGATSFVRS YIR

Best Arabidopsis Sequence Match ( AT4G22910.1 )
(BLAST)

001: MEEEDPTASN VITNSNSSSM RNLSPAMNTP VVSLESRINR LINANQSQSP SPSSLSRSIY SDRFIPSRSG SNFALFDLSP SPSKDGKEDG AGSYATLLRA
101: AMFGPETPEK RDITGFSSSR NIFRFKTETH RSLNSFSPFG VDDDSPGVSH SGPVKAPRKV PRSPYKVLDA PALQDDFYLN LVDWSAQNVL AVGLGNCVYL
201: WNACSSKVTK LCDLGAEDSV CSVGWALRGT HLAVGTSTGK VQIWDASRCK RTRTMEGHRL RVGALAWGSS VLSSGSRDKS ILQRDIRCQE DHVSKLAGHK
301: SEVCGLKWSY DNRELASGGN DNRLFVWNQH STQPVLKYSE HTAAVKAIAW SPHVHGLLAS GGGTADRCIR FWNTTTNTHL SSIDTCSQVC NLAWSKNVNE
401: LVSTHGYSQN QIIVWKYPTM SKIATLTGHT YRVLYLAVSP DGQTIVTGAG DETLRFWNVF PSPKSQNTDS EIGSSFFGRT TIR

Arabidopsis Description

FZR2FZR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.