Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES10334 | Sorghum | nucleus | 67.56 | 38.17 |
| Zm00001d004541_P009 | Maize | nucleus | 66.74 | 38.1 |
| KRH54851 | Soybean | cytosol | 9.86 | 37.5 |
| Zm00001d024928_P003 | Maize | nucleus | 64.89 | 36.11 |
| TraesCS2B01G051800.1 | Wheat | nucleus | 64.07 | 34.86 |
| TraesCS2A01G039200.1 | Wheat | nucleus | 64.68 | 34.24 |
| GSMUA_Achr5P18510_001 | Banana | nucleus | 46.2 | 34.19 |
| HORVU2Hr1G005690.1 | Barley | nucleus | 63.66 | 33.92 |
| TraesCS2D01G037700.2 | Wheat | nucleus | 62.63 | 33.15 |
| CDY04566 | Canola | nucleus | 46.0 | 29.63 |
| CDY15748 | Canola | nucleus | 46.41 | 29.54 |
| Bra011947.1-P | Field mustard | nucleus | 44.76 | 27.77 |
| VIT_06s0004g02940.t01 | Wine grape | nucleus | 47.23 | 27.28 |
| AT2G28450.1 | Thale cress | nucleus | 44.97 | 27.07 |
| KRH24877 | Soybean | nucleus | 46.82 | 25.68 |
| KRH29928 | Soybean | nucleus | 46.82 | 25.62 |
| CDY60349 | Canola | nucleus | 26.49 | 25.6 |
| CDY60348 | Canola | golgi, vacuole | 27.93 | 24.82 |
| Solyc11g069340.1.1 | Tomato | nucleus | 46.41 | 24.54 |
| Os01t0193600-01 | Rice | mitochondrion, plastid | 12.53 | 10.95 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.70.330 | Gene3D:4.10.1000.10 | UniProt:A0A0P0W5V0 | ProteinID:BAS87526.1 | ncoils:Coil |
| GO:GO:0001510 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008173 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0032259 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:IPR010280 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os04g0105000 | EnsemblPlants:Os04t0105000-01 | PFAM:PF00642 | PFscan:PS50103 | PANTHER:PTHR11061 |
| PANTHER:PTHR11061:SF24 | InterPro:RBD_domain_sf | InterPro:SAM-dependent_MTases | SUPFAM:SSF53335 | SUPFAM:SSF54928 | SUPFAM:SSF90229 |
| InterPro:U5_MeTrfase_fam | UniParc:UPI0000DD8F04 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg | : |
Description
Zinc finger, CCCH-type domain containing protein. (Os04t0105000-01)
Coordinates
chr4:+:321281..328894
Molecular Weight (calculated)
53274.1 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.440
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMEMEDNKA PSPPSPMESD VAGEKRKRED DASSSAVLAA ANNTGGAQHP MWKTSLCSFF RRRAASSADG CSHGDSCRYA HSEEELRPRP DGTWDPTSDR
101: AKKLRKVAAD EVEEEVVTID DKALDKCLVG LPRGWANDRL KTFLQDKGIS YATAKKKKGM TVGFVTFENI EQLKNAIEVL TENQSGGKEI KIADANRRSH
201: QKLHTEKPVS DNGVTTENGT SVDVPPGETS APEAAISNKK SVRDAVTPLA HMSYNDQLEH KKNSVAQILK RLTRNARKAC PTGIPLPDWV FKSKEIGGLP
301: CKLEGILESP VINGYRNKCE FSVGFSLEGK KTVGFMLGNF REGVTAVEEP VDCPNVSEIS CKYALMFQDF LQSSSLPVWN RVDNCGFWRQ FTVREGRCQA
401: QAVAQNAENQ ISEVMLIVQV CSTGVDDAVM KDEFDKLTVA LQQGAATCSP PLPLTTIVVQ VSLSSLSGSK TSIYSFLHCL NISACLN
101: AKKLRKVAAD EVEEEVVTID DKALDKCLVG LPRGWANDRL KTFLQDKGIS YATAKKKKGM TVGFVTFENI EQLKNAIEVL TENQSGGKEI KIADANRRSH
201: QKLHTEKPVS DNGVTTENGT SVDVPPGETS APEAAISNKK SVRDAVTPLA HMSYNDQLEH KKNSVAQILK RLTRNARKAC PTGIPLPDWV FKSKEIGGLP
301: CKLEGILESP VINGYRNKCE FSVGFSLEGK KTVGFMLGNF REGVTAVEEP VDCPNVSEIS CKYALMFQDF LQSSSLPVWN RVDNCGFWRQ FTVREGRCQA
401: QAVAQNAENQ ISEVMLIVQV CSTGVDDAVM KDEFDKLTVA LQQGAATCSP PLPLTTIVVQ VSLSSLSGSK TSIYSFLHCL NISACLN
001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER
Arabidopsis Description
Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.