Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G037700.2 | Wheat | nucleus | 87.61 | 87.61 |
| TraesCS2B01G051800.1 | Wheat | nucleus | 84.46 | 86.82 |
| HORVU2Hr1G005690.1 | Barley | nucleus | 82.83 | 83.37 |
| Zm00001d004541_P009 | Maize | nucleus | 62.28 | 67.17 |
| EES10334 | Sorghum | nucleus | 62.5 | 66.71 |
| Os04t0105000-01 | Rice | nucleus | 34.24 | 64.68 |
| Zm00001d024928_P003 | Maize | nucleus | 59.89 | 62.97 |
| CDY60349 | Canola | nucleus | 29.57 | 53.97 |
| CDY04566 | Canola | nucleus | 44.24 | 53.84 |
| CDY15748 | Canola | nucleus | 44.02 | 52.94 |
| Bra011947.1-P | Field mustard | nucleus | 44.02 | 51.59 |
| VIT_06s0004g02940.t01 | Wine grape | nucleus | 46.96 | 51.25 |
| AT2G28450.1 | Thale cress | nucleus | 43.7 | 49.69 |
| GSMUA_Achr5P18510_001 | Banana | nucleus | 34.67 | 48.48 |
| KRH24877 | Soybean | nucleus | 46.74 | 48.42 |
| KRH29928 | Soybean | nucleus | 46.3 | 47.87 |
| Solyc11g069340.1.1 | Tomato | nucleus | 46.2 | 46.15 |
| CDY60348 | Canola | golgi, vacuole | 26.96 | 45.26 |
| KRH54851 | Soybean | cytosol | 5.43 | 39.06 |
| TraesCS3A01G105900.1 | Wheat | mitochondrion | 15.65 | 25.76 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.70.330 | Gene3D:4.10.1000.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008173 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:IPR010280 |
| InterPro:IPR012677 | InterPro:MeTrfase_TrmA_AS | InterPro:Methyltranfer_dom | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00642 | PFAM:PF05958 |
| PFAM:PF13847 | ScanProsite:PS01230 | PFscan:PS50103 | PFscan:PS51687 | PANTHER:PTHR11061 | PANTHER:PTHR11061:SF24 |
| InterPro:RBD_domain_sf | InterPro:SAM-dependent_MTases | SMART:SM00356 | SUPFAM:SSF53335 | SUPFAM:SSF54928 | SUPFAM:SSF90229 |
| EnsemblPlantsGene:TraesCS2A01G039200 | EnsemblPlants:TraesCS2A01G039200.1 | InterPro:U5_MeTrfase_fam | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | TIGR:cd00590 |
| TIGR:cd02440 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:16398757..16405808
Molecular Weight (calculated)
99532.1 Da
IEP (calculated)
5.455
GRAVY (calculated)
-0.516
Length
920 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTAGALPEN LFRKPSVPAA MEDTTPPPPT QQAPELAGEK RKREEESPAA AAGENLSMED PTQPPLPPQQ QQEAEPAGEK RKREEESPEA APGDAAPAPQ
101: AAPTGEAASA ATGEGGGERH PMSKTSLCSF FRRRGGGPDG CNHGEACRYA HTEEELRPRP DGTWDPTSDR AKKLRRVSEE DGEGAAGEER RDRWGQEEVT
201: FDETSLDKCL VGLSRHWLTD RLKAFLDEQG ISYAVAKKKK GMTVGFVTFE TVEQLKNAVE VLKENRSGGK QIKIADANRR SHQKLHAEGP VSNNGAATEN
301: SSDAAAPADG TSGPEAAGAS KRTVRDAVTP LAHMAYSDQL EHKKSSVAQL LKKLTRNAKK ACPADVTLPD WISNAKLIGG LSCKLEGILE SPVIDGYRNK
401: CEFSVGHSLA GKKTVGFMLG NFREGVTAVE EPVDCPNVSA MSCKYAMMFQ DFLQLSCLPA WNRVDNSGFW RQFTVREGRS PAQAVVAQDT QTQISEVMII
501: IQVCSTGVDE VLMKDEFAKL SKTLVQGAAT CSPPLPLTTI VVQDHVGISN VAPADCPLIP LLAPEVDQSE EGAVDKTRIH DHISNLRFSL SPTAFFQVNT
601: LAAERLYTLA GDWANLNSDT LLFDVCCGTG TIGLTLAHRV GMVVGIEMNE SAVVDAQRNA LINGIKNCRF VCGKAEDVMG PLLTEYLGSP QRHIAASESN
701: SEVNGTGKKE DIVGGAENNG KSTESLTEKN ESGEINEDLD DGVSKELEGG HEQCNEVVRN QNSEEASSLV NEESVDVKAA DCSEHSKTRE EGSSISKNDV
801: LAATACQFKN FVAIVDPPRA GLHPTVIKVL RTHPRIRRLV YISCNPDTLV ANAIELCTPS TEHKEKNKGH RGWRNMSSAG LARQRTKSMP NSEPFVPKRA
901: MAVDLFPHTS HCEMVMLFER
101: AAPTGEAASA ATGEGGGERH PMSKTSLCSF FRRRGGGPDG CNHGEACRYA HTEEELRPRP DGTWDPTSDR AKKLRRVSEE DGEGAAGEER RDRWGQEEVT
201: FDETSLDKCL VGLSRHWLTD RLKAFLDEQG ISYAVAKKKK GMTVGFVTFE TVEQLKNAVE VLKENRSGGK QIKIADANRR SHQKLHAEGP VSNNGAATEN
301: SSDAAAPADG TSGPEAAGAS KRTVRDAVTP LAHMAYSDQL EHKKSSVAQL LKKLTRNAKK ACPADVTLPD WISNAKLIGG LSCKLEGILE SPVIDGYRNK
401: CEFSVGHSLA GKKTVGFMLG NFREGVTAVE EPVDCPNVSA MSCKYAMMFQ DFLQLSCLPA WNRVDNSGFW RQFTVREGRS PAQAVVAQDT QTQISEVMII
501: IQVCSTGVDE VLMKDEFAKL SKTLVQGAAT CSPPLPLTTI VVQDHVGISN VAPADCPLIP LLAPEVDQSE EGAVDKTRIH DHISNLRFSL SPTAFFQVNT
601: LAAERLYTLA GDWANLNSDT LLFDVCCGTG TIGLTLAHRV GMVVGIEMNE SAVVDAQRNA LINGIKNCRF VCGKAEDVMG PLLTEYLGSP QRHIAASESN
701: SEVNGTGKKE DIVGGAENNG KSTESLTEKN ESGEINEDLD DGVSKELEGG HEQCNEVVRN QNSEEASSLV NEESVDVKAA DCSEHSKTRE EGSSISKNDV
801: LAATACQFKN FVAIVDPPRA GLHPTVIKVL RTHPRIRRLV YISCNPDTLV ANAIELCTPS TEHKEKNKGH RGWRNMSSAG LARQRTKSMP NSEPFVPKRA
901: MAVDLFPHTS HCEMVMLFER
001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER
Arabidopsis Description
Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.