Factsheet for HORVU2Hr1G005690.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G093310.1	Barley	cytosol	8.75	100.0
TraesCS2D01G037700.2	Wheat	nucleus	89.39	88.8
TraesCS2B01G051800.1	Wheat	nucleus	86.32	88.16
TraesCS2A01G039200.1	Wheat	nucleus	83.37	82.83
EES10334	Sorghum	nucleus	64.11	67.98
Zm00001d004541_P009	Maize	nucleus	63.35	67.88
Zm00001d024928_P003	Maize	nucleus	60.94	63.66
Os04t0105000-01	Rice	nucleus	33.92	63.66
HORVU2Hr1G093250.1	Barley	cytosol, nucleus, plastid	9.19	58.33
CDY04566	Canola	nucleus	44.86	54.23
CDY60349	Canola	nucleus	29.76	53.97
CDY15748	Canola	nucleus	43.98	52.55
Bra011947.1-P	Field mustard	nucleus	44.53	51.85
VIT_06s0004g02940.t01	Wine grape	nucleus	47.05	51.01
AT2G28450.1	Thale cress	nucleus	43.65	49.32
GSMUA_Achr5P18510_001	Banana	nucleus	35.34	49.09
KRH24877	Soybean	nucleus	46.83	48.2
KRH29928	Soybean	nucleus	46.61	47.87
Solyc11g069340.1.1	Tomato	nucleus	48.03	47.67
CDY60348	Canola	golgi, vacuole	27.02	45.07
KRH54851	Soybean	cytosol	5.47	39.06
HORVU3Hr1G019340.3	Barley	plastid	15.97	24.79

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	UniProt:A0A287GYZ2	ncoils:Coil	GO:GO:0001510
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173	GO:GO:0009987	GO:GO:0016740
GO:GO:0032259	GO:GO:0046872	EnsemblPlantsGene:HORVU2Hr1G005690	EnsemblPlants:HORVU2Hr1G005690.1	InterPro:IPR000571	InterPro:IPR010280
InterPro:IPR012677	InterPro:MeTrfase_TrmA_AS	InterPro:Methyltranfer_dom	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00642	PFAM:PF05958
PFAM:PF13847	ScanProsite:PS01230	PFscan:PS50103	PFscan:PS51687	PANTHER:PTHR11061	PANTHER:PTHR11061:SF24
InterPro:RBD_domain_sf	InterPro:SAM-dependent_MTases	SMART:SM00356	SUPFAM:SSF53335	SUPFAM:SSF54928	SUPFAM:SSF90229
InterPro:U5_MeTrfase_fam	UniParc:UPI000B485739	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:

Description

No Description!

Coordinates

chrchr2H:+:12345172..12354105

Molecular Weight (calculated)

98868.1 Da

IEP (calculated)

5.437

GRAVY (calculated)

-0.561

Length

914 amino acids

Sequence
(BLAST)

001: MKTGSPPKPF PQPSPVPAAM EGTTTPPPQE QQAPELTGEK RKREEGSPAA PAGENPAMED TTQPPQQQEE AQPAGEKRKR EEDEAPEASA GDAAPASAPA
101: GEEATAAAPT GEGARHPMSK TSLCSFFRRR GGGPDGCNHG EACRYAHTEE ELRPRPDGTW DPTSDRAKKL RRVSEEDGEA VEDEKRGRWG QEEVTIDDSS
201: LDKCLVGLSR HWLTDRLKSF LDEQGISYAV AKKKKGMTVG FVTFETVEQL KNAVEVLKEN RSGGKQIKIA DANRRSHQKL HSEGPVSNNG AATENSSDAA
301: APDEGTPGPE AGGGTKRTVR DAVTPLAHMT YSDQLEHKKS SVAQLLKKLT RNAKKACPAD VTLPDWISNA KQIGGLSCKL EGILESPVID GYRNKCEFSV
401: GHSLAGKKTV GFMLGNFREG VTAVEEPVDC PNVSALSCKY AMMFQDFLQL SCLPAWNRVD NSGFWRQFTV REGRSPAQAV VAQDTQTQIS EVMIIIQVCS
501: TGVDEAQMKD EFAKLTKTLV QGAATCLPPL PLTTIVVQDH TGISNVAPAD CPLIPLLVPE VDQSEEGAVD KTRIHDHISN LRFSLSPTAF FQVNTLAAER
601: LYTLAGDWAN LNSDTLLFDV CCGTGTIGLT LAHRVGMVVG IEMNESAVVD AQRNALINGI KNCRFVCGKA EDVMGSLLTE YLGSPQQHIA ASESNSEVNA
701: AGKKEDIVDG AENNGKSMDS LTEENDNGES QQLGDKSANH PTCSSKELEG GHEQCNEAVR NQNSEEASSL VNDESVDAKA ADGSEHIKTS NNDVLAAIGC
801: QFKNFVAIVD PPRAGLHPTV IKVLRTHPRI RRLVYISCNP DTLVANAIEL CTPSTEHREK NKGHRGWRNM SSAGLARQRT KSMPNSEPFV PKRAMAVDLF
901: PHTSHCEMVM LFER

Best Arabidopsis Sequence Match ( AT2G28450.1 )
(BLAST)

001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER

Arabidopsis Description

Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.