CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29928	Soybean	nucleus	92.79	92.58
CDY60349	Canola	nucleus	34.23	60.32
CDY04566	Canola	nucleus	51.01	59.92
VIT_06s0004g02940.t01	Wine grape	nucleus	56.31	59.31
CDY15748	Canola	nucleus	50.79	58.95
Bra011947.1-P	Field mustard	nucleus	51.58	58.34
AT2G28450.1	Thale cress	nucleus	48.76	53.52
Solyc11g069340.1.1	Tomato	nucleus	54.28	52.33
CDY60348	Canola	golgi, vacuole	32.09	52.01
EES10334	Sorghum	nucleus	48.2	49.65
Zm00001d004541_P009	Maize	nucleus	47.64	49.59
KRH54851	Soybean	cytosol	6.87	47.66
TraesCS2B01G051800.1	Wheat	nucleus	47.97	47.6
GSMUA_Achr5P18510_001	Banana	nucleus	34.91	47.11
HORVU2Hr1G005690.1	Barley	nucleus	48.2	46.83
Os04t0105000-01	Rice	nucleus	25.68	46.82
TraesCS2A01G039200.1	Wheat	nucleus	48.42	46.74
TraesCS2D01G037700.2	Wheat	nucleus	48.09	46.41
Zm00001d024928_P003	Maize	nucleus	45.72	46.4
KRH23347	Soybean	nucleus	16.67	27.77
KRH09984	Soybean	mitochondrion	11.26	26.81

Protein Annotations

EntrezGene:100777601	MapMan:15.5.16	Gene3D:3.30.70.330	Gene3D:3.40.1350.30	Gene3D:4.10.1000.10	EMBL:ACUP02007190
ncoils:Coil	EnsemblPlantsGene:GLYMA_12G068100	GO:GO:0001510	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008173	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	GO:GO:0046872	InterPro:IPR000571
InterPro:IPR010280	InterPro:IPR012677	UniProt:K7LTE4	EnsemblPlants:KRH24877	ProteinID:KRH24877	ProteinID:KRH24877.1
InterPro:MeTrfase_TrmA_AS	InterPro:Methyltranfer_dom	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00642	PFAM:PF05958	PFAM:PF13847
ScanProsite:PS01230	PFscan:PS50103	PFscan:PS51687	PANTHER:PTHR11061	PANTHER:PTHR11061:SF24	InterPro:RBD_domain_sf
InterPro:SAM-dependent_MTases	SMART:SM00356	SUPFAM:SSF53335	SUPFAM:SSF54928	SUPFAM:SSF90229	InterPro:U5_MeTrfase_fam
UniParc:UPI000233C170	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:-:5005964..5011254

Molecular Weight (calculated)

96521.5 Da

IEP (calculated)

5.016

GRAVY (calculated)

-0.432

Length

888 amino acids

Sequence
(BLAST)

001: MAEPLSNTEL SSSKTLDPTN GHDSTSEPHQ TAPEDSQLNR EDDVVPTAKR KRDDDVEDRS LHPLWKTSLC SYFRSHNGSC SHGGACRYAH GEEELRPRPD
101: NTWDPTSERA KKALKTESDE KRAVSEEVMM TEAVVDDGDD GCGANHALNI CLVHLPRKWS SENLRTFLSE QGIPFKHAKK KKGMMIGFVT FEDEEQLKSS
201: TMELEGKSIG NKTVKVANVL PRSFEKKSNA IVASRQELDE ENAGVDVASS GTLDGETNND NLAKTRNVRD AVTPLAHMAY ADQLEQKTSS LMQILKKLTR
301: NARKACPNGV SLPEWILKSR EIGGLPCKLE GIIASPIVNG YRNKCEFSVG YSLEGKVTVG FMLGNFREGV TAVEEAVDCP NVSTVACKYA TIFQEFLQDS
401: DLPVWNRFKN TGFWRQLTVR EGRTNGNVVD AETFSGVAEV MLIVQVSTAS FDDAKVAAEF KRLAQAFVAG ATSHCPILPL TALVVQDHQG ISNVAPADAP
501: LHSLPIPEAA GDPEVDENNN AKDVRIHDHI NNLQFSISPT AFFQVNTLAA EKLYSLAGDW SCLGPDTLLF DICCGTGTIG LTLAHRVGMV IGIEMNASAV
601: SDAHRNAEIN GIKNVKFICS KAEDVMGSLL REYLNVTKEQ VDDPNISGSG NDIPKDSACP EPENCEIASR CPENNIAEVG SEVQKGCTCE QADGISEQAE
701: DVMGSLLRGD ANVAKEQSDD PNVSGSSNDI PVDGTCPEPE NGEITSHSEN NNAEVGGEVQ KGISSENGKT SLQQFKNVVA IVDPPRAGLH PTVIKALRTH
801: PGLRRLVYIS CNPETLVANA IELCTPSPVK IEKGNKDNRG WRNMSSAGLA RHRAKSMPIS EAFHPVKAMA VDLFPHTPHC ELVMLLER

Best Arabidopsis Sequence Match ( AT2G28450.2 )
(BLAST)

001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRYISCNPE TLVANAIELC TPSFDEPDRG NKNYRGRKKI GIAALARHRA KSMPTSEAFR PVKAMAVDLF PHTDHCEMVM
801: LLER

Arabidopsis Description

Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.