CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04566	Canola	nucleus	88.5	89.55
Bra011947.1-P	Field mustard	nucleus	87.32	85.1
CDY60349	Canola	nucleus	53.86	81.75
CDY60348	Canola	golgi, vacuole	49.02	68.43
AT2G28450.1	Thale cress	nucleus	66.93	63.29
VIT_06s0004g02940.t01	Wine grape	nucleus	57.52	52.19
KRH24877	Soybean	nucleus	58.95	50.79
KRH29928	Soybean	nucleus	58.3	50.11
EES10334	Sorghum	nucleus	54.77	48.61
Zm00001d004541_P009	Maize	nucleus	53.86	48.3
Os04t0105000-01	Rice	nucleus	29.54	46.41
Solyc11g069340.1.1	Tomato	nucleus	55.56	46.15
TraesCS2B01G051800.1	Wheat	nucleus	53.33	45.59
Zm00001d024928_P003	Maize	nucleus	51.76	45.26
TraesCS2A01G039200.1	Wheat	nucleus	52.94	44.02
HORVU2Hr1G005690.1	Barley	nucleus	52.55	43.98
TraesCS2D01G037700.2	Wheat	nucleus	52.68	43.8
GSMUA_Achr5P18510_001	Banana	nucleus	37.52	43.62
KRH54851	Soybean	cytosol	6.41	38.28
CDY56917	Canola	plastid	18.43	24.19
CDY51452	Canola	plastid	17.91	23.3
CDX88149	Canola	cytosol	2.22	13.71
CDY37612	Canola	cytosol	1.96	12.0

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.70.330	Gene3D:3.40.1350.30	Gene3D:3.40.50.150	Gene3D:4.10.1000.10	GO:A0A078FTS4
UniProt:A0A078FTS4	EnsemblPlants:CDY15748	ProteinID:CDY15748	ProteinID:CDY15748.1	ncoils:Coil	GO:GO:0001510
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173	GO:GO:0009987	GO:GO:0016740
GO:GO:0032259	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00089987001	InterPro:IPR000571	InterPro:IPR010280	InterPro:IPR012677
InterPro:MeTrfase_TrmA_AS	InterPro:Methyltranfer_dom	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00642	PFAM:PF05958	PFAM:PF13847
ScanProsite:PS01230	PFscan:PS50103	PFscan:PS51687	PANTHER:PTHR11061	PANTHER:PTHR11061:SF24	InterPro:RBD_domain_sf
InterPro:SAM-dependent_MTases	SMART:SM00356	SUPFAM:SSF53335	SUPFAM:SSF54928	SUPFAM:SSF90229	InterPro:U5_MeTrfase_fam
UniParc:UPI0004EE1CF2	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

BnaC04g15760DBnaC04g15760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTS4]

Coordinates

chrLK032057:-:165415..169154

Molecular Weight (calculated)

84219.9 Da

IEP (calculated)

6.191

GRAVY (calculated)

-0.461

Length

765 amino acids

Sequence
(BLAST)

001: MTSSSVDELP SAAETLTYQI PSDTTPIDPI PSSNDVEAVG EKRKRDDDDD EKTTNLESST PSPWFKTSLC SYFRRQGSCS HGDACKYAHG EKELRQKPDN
101: TWDPTSERGK KVKMMSEKSA EEEEEGGVHD LSLSKCLVHL PTKWQSDDIK TFLREQGVEY KFAKKRRGMM VGFLTFENAE QLKNGVEVLE GKNVNNKSLK
201: IANVLPRTFD KNGAKNPAAK LKSAREAVTP LADLSYADQL EQKKASISQM LKKLTRNARK ACPNGKSLPE WVLQSREIGG LSCKLEGIIE SPLVNGYRNK
301: CEFSTGYSVE GKLTVGFMLG NFSAGVTAVE EAVNCPNISK LACRYASIFQ SFLEKSRLPV WNRFKSCGFW RQLTVREGSK PGVVSSDEDA DSRIAEVMLM
401: VQVCSTDTDE AEVATEFEQM AKAFAEGARA SSPPLPLTVL VVQDHVGISN VAPPDCPLRL LPIPVSDNGT HQDQSTNVLT EARIHDHINN LRFSISPTAF
501: FQVNTCAAEK LYSLAGDWAD LGPDTLLFDV CCGTGTIGLT LAHRVGMVIG IEMNASAVSD AERNAKINGI SNCKFICSKA CAEDVMSSLL TEYLDVSETE
601: EAKPLSGDLE KQISSAEEIS NSEDAPPANI QEVQKTEQKD SSETERSTKR QFKNVVAIVD PPRPGLHPDV IKALRTHPRL KTLVYISCNP ETLVANAIEL
701: CTPSFEKTGQ ENKGYRRQSK MGTAALARHR AKKMPASEPF KPVKAMAVDL FPHTDHCEMV MLLNR

Best Arabidopsis Sequence Match ( AT2G28450.1 )
(BLAST)

001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER

Arabidopsis Description

Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.