CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009808.1-P	Field mustard	cytosol	98.39	98.39
CDY37612	Canola	cytosol	74.19	73.6
CDY51452	Canola	plastid	78.23	16.5
CDY56917	Canola	plastid	77.42	16.47
AT3G21300.1	Thale cress	mitochondrion	71.77	16.07
KRH23347	Soybean	nucleus	62.9	14.63
GSMUA_Achr2P19450_001	Banana	cytosol, mitochondrion	64.52	13.29
VIT_09s0002g02670.t01	Wine grape	plastid	60.48	13.16
Solyc03g121260.2.1	Tomato	plastid	59.68	13.01
PGSC0003DMT400006437	Potato	plastid	59.68	11.58
Os01t0193600-01	Rice	mitochondrion, plastid	49.19	10.95
TraesCS3D01G108100.1	Wheat	mitochondrion	48.39	10.75
TraesCS3B01G124400.1	Wheat	mitochondrion	48.39	10.75
EES00136	Sorghum	mitochondrion	48.39	10.75
TraesCS3A01G105900.1	Wheat	mitochondrion	48.39	10.73
Zm00001d039477_P001	Maize	plastid	47.58	10.57
HORVU3Hr1G019340.3	Barley	plastid	48.39	10.19
KRH09984	Soybean	mitochondrion	22.58	7.51
CDY60348	Canola	golgi, vacuole	16.94	3.83
CDY60349	Canola	nucleus	12.9	3.17
CDY04566	Canola	nucleus	13.71	2.25
CDY15748	Canola	nucleus	13.71	2.22

Protein Annotations

Gene3D:2.40.50.140	Gene3D:3.40.50.150	MapMan:35.2	EnsemblPlants:CDX88149	ProteinID:CDX88149	ProteinID:CDX88149.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0008173	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00147595001	InterPro:IPR002792	InterPro:IPR010280
InterPro:NA-bd_OB-fold	PFscan:PS50926	PANTHER:PTHR11061	PANTHER:PTHR11061:SF30	InterPro:SAM-dependent_MTases	SUPFAM:SSF50249
SUPFAM:SSF53335	InterPro:TRAM_dom	InterPro:U5_MeTrfase_fam	UniParc:UPI0004EF2E5A	:	:

Description

BnaA06g27400D

Coordinates

chrLK031854:+:941848..942332

Molecular Weight (calculated)

13597.7 Da

IEP (calculated)

8.584

GRAVY (calculated)

-0.101

Length

124 amino acids

Sequence
(BLAST)

001: MDIVCESLGF KGKGICKVHG TGFVVMCDRA LPGERFLGCV TRRKGSYAEV TKIKTLTPHR DLVEAPCEYA SYCGGCKAQN LSYEAQLRAK DEQVHTKLTL
101: HRTTLPIPCQ SSLVPAVHPL GIHI

Best Arabidopsis Sequence Match ( AT3G21300.1 )
(BLAST)

001: MLAATPAHGL RYVVVPTRSW LHRFRCCSSS LAPLSPSEFS GGNKAQKKLN DENNTNVSNE KTAPYYPKRG ETVELVCESL GFKGKGICKV DGTGYVVMCD
101: RALPGERFLG RVTRRKGSYA EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN PGLEIVLKPI VACDIQFHYR
201: NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL
301: ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS
401: EVVLDLFCGT GTIGLTLARR AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP GMHMKLIKFL LKLKSPRIIY
501: VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP HTPHIECVCL LELA

Arabidopsis Description

RNA methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU28]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.