Skip to main content
crop-pal logo
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 3
  • mitochondrion 6
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra031272.1-P Field mustard mitochondrion 87.36 86.89
Bra008455.1-P Field mustard cytosol 18.95 84.0
Bra019367.1-P Field mustard cytosol 18.95 84.0
CDY37612 Canola cytosol 18.95 84.0
CDY51452 Canola plastid 86.64 81.63
CDY56917 Canola plastid 85.56 81.3
KRH23347 Soybean nucleus 69.86 72.61
Bra009808.1-P Field mustard cytosol 16.07 71.77
CDX88149 Canola cytosol 16.07 71.77
Solyc03g121260.2.1 Tomato plastid 67.51 65.73
KRH09984 Soybean mitochondrion 43.14 64.08
VIT_09s0002g02670.t01 Wine grape plastid 65.88 64.04
GSMUA_Achr2P19450_001 Banana cytosol, mitochondrion 69.49 63.95
Os01t0193600-01 Rice mitochondrion, plastid 63.9 63.55
EES00136 Sorghum mitochondrion 63.72 63.26
TraesCS3D01G108100.1 Wheat mitochondrion 63.36 62.9
TraesCS3A01G105900.1 Wheat mitochondrion 63.36 62.79
TraesCS3B01G124400.1 Wheat mitochondrion 63.0 62.54
Zm00001d039477_P001 Maize plastid 62.27 61.83
HORVU3Hr1G019340.3 Barley plastid 63.36 59.59
PGSC0003DMT400006437 Potato plastid 67.33 58.37
AT2G28450.1 Thale cress nucleus 24.19 16.56
Protein Annotations
Gene3D:2.40.50.140InterPro:23S_rRNA_MeTrfase_RlmDGene3D:3.40.1350.30Gene3D:3.40.50.150MapMan:50.2.1EntrezGene:821684
ProteinID:AEE76490.1ArrayExpress:AT3G21300EnsemblPlantsGene:AT3G21300RefSeq:AT3G21300TAIR:AT3G21300RefSeq:AT3G21300-TAIR-G
EnsemblPlants:AT3G21300.1TAIR:AT3G21300.1ProteinID:BAB01724.1GO:GO:0001510GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003824GO:GO:0005488GO:GO:0006139GO:GO:0006396GO:GO:0006950
GO:GO:0008150GO:GO:0008152GO:GO:0008168GO:GO:0008173GO:GO:0009409GO:GO:0009628
GO:GO:0009987GO:GO:0016740GO:GO:0032259InterPro:IPR002792InterPro:IPR010280InterPro:MeTrfase_TrmA_CS
InterPro:NA-bd_OB-foldRefSeq:NP_188767.2PFAM:PF05958PO:PO:0000037PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007098PO:PO:0007115
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009052PO:PO:0020038
PO:PO:0025022ScanProsite:PS01231PFscan:PS50926PFscan:PS51687PANTHER:PTHR11061PANTHER:PTHR11061:SF30
UniProt:Q9LU28InterPro:SAM-dependent_MTasesSUPFAM:SSF50249SUPFAM:SSF53335TIGRFAMs:TIGR00479InterPro:TRAM_dom
InterPro:U5_MeTrfase_famUniParc:UPI00000A0AC5SEG:seg:::
Description
RNA methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU28]
Coordinates
chr3:-:7492739..7496371
Molecular Weight (calculated)
61735.4 Da
IEP (calculated)
7.841
GRAVY (calculated)
-0.264
Length
554 amino acids
Sequence
(BLAST)
001: MLAATPAHGL RYVVVPTRSW LHRFRCCSSS LAPLSPSEFS GGNKAQKKLN DENNTNVSNE KTAPYYPKRG ETVELVCESL GFKGKGICKV DGTGYVVMCD
101: RALPGERFLG RVTRRKGSYA EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN PGLEIVLKPI VACDIQFHYR
201: NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL
301: ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS
401: EVVLDLFCGT GTIGLTLARR AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP GMHMKLIKFL LKLKSPRIIY
501: VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP HTPHIECVCL LELA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.