Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 6
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra031272.1-P | Field mustard | mitochondrion | 87.36 | 86.89 |
Bra008455.1-P | Field mustard | cytosol | 18.95 | 84.0 |
Bra019367.1-P | Field mustard | cytosol | 18.95 | 84.0 |
CDY37612 | Canola | cytosol | 18.95 | 84.0 |
CDY51452 | Canola | plastid | 86.64 | 81.63 |
CDY56917 | Canola | plastid | 85.56 | 81.3 |
KRH23347 | Soybean | nucleus | 69.86 | 72.61 |
Bra009808.1-P | Field mustard | cytosol | 16.07 | 71.77 |
CDX88149 | Canola | cytosol | 16.07 | 71.77 |
Solyc03g121260.2.1 | Tomato | plastid | 67.51 | 65.73 |
KRH09984 | Soybean | mitochondrion | 43.14 | 64.08 |
VIT_09s0002g02670.t01 | Wine grape | plastid | 65.88 | 64.04 |
GSMUA_Achr2P19450_001 | Banana | cytosol, mitochondrion | 69.49 | 63.95 |
Os01t0193600-01 | Rice | mitochondrion, plastid | 63.9 | 63.55 |
EES00136 | Sorghum | mitochondrion | 63.72 | 63.26 |
TraesCS3D01G108100.1 | Wheat | mitochondrion | 63.36 | 62.9 |
TraesCS3A01G105900.1 | Wheat | mitochondrion | 63.36 | 62.79 |
TraesCS3B01G124400.1 | Wheat | mitochondrion | 63.0 | 62.54 |
Zm00001d039477_P001 | Maize | plastid | 62.27 | 61.83 |
HORVU3Hr1G019340.3 | Barley | plastid | 63.36 | 59.59 |
PGSC0003DMT400006437 | Potato | plastid | 67.33 | 58.37 |
AT2G28450.1 | Thale cress | nucleus | 24.19 | 16.56 |
Protein Annotations
Gene3D:2.40.50.140 | InterPro:23S_rRNA_MeTrfase_RlmD | Gene3D:3.40.1350.30 | Gene3D:3.40.50.150 | MapMan:50.2.1 | EntrezGene:821684 |
ProteinID:AEE76490.1 | ArrayExpress:AT3G21300 | EnsemblPlantsGene:AT3G21300 | RefSeq:AT3G21300 | TAIR:AT3G21300 | RefSeq:AT3G21300-TAIR-G |
EnsemblPlants:AT3G21300.1 | TAIR:AT3G21300.1 | ProteinID:BAB01724.1 | GO:GO:0001510 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0006950 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008173 | GO:GO:0009409 | GO:GO:0009628 |
GO:GO:0009987 | GO:GO:0016740 | GO:GO:0032259 | InterPro:IPR002792 | InterPro:IPR010280 | InterPro:MeTrfase_TrmA_CS |
InterPro:NA-bd_OB-fold | RefSeq:NP_188767.2 | PFAM:PF05958 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 |
PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007098 | PO:PO:0007115 |
PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 |
PO:PO:0025022 | ScanProsite:PS01231 | PFscan:PS50926 | PFscan:PS51687 | PANTHER:PTHR11061 | PANTHER:PTHR11061:SF30 |
UniProt:Q9LU28 | InterPro:SAM-dependent_MTases | SUPFAM:SSF50249 | SUPFAM:SSF53335 | TIGRFAMs:TIGR00479 | InterPro:TRAM_dom |
InterPro:U5_MeTrfase_fam | UniParc:UPI00000A0AC5 | SEG:seg | : | : | : |
Description
RNA methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU28]
Coordinates
chr3:-:7492739..7496371
Molecular Weight (calculated)
61735.4 Da
IEP (calculated)
7.841
GRAVY (calculated)
-0.264
Length
554 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAATPAHGL RYVVVPTRSW LHRFRCCSSS LAPLSPSEFS GGNKAQKKLN DENNTNVSNE KTAPYYPKRG ETVELVCESL GFKGKGICKV DGTGYVVMCD
101: RALPGERFLG RVTRRKGSYA EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN PGLEIVLKPI VACDIQFHYR
201: NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL
301: ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS
401: EVVLDLFCGT GTIGLTLARR AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP GMHMKLIKFL LKLKSPRIIY
501: VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP HTPHIECVCL LELA
101: RALPGERFLG RVTRRKGSYA EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN PGLEIVLKPI VACDIQFHYR
201: NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL
301: ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS
401: EVVLDLFCGT GTIGLTLARR AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP GMHMKLIKFL LKLKSPRIIY
501: VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP HTPHIECVCL LELA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.