Factsheet for Solyc03g121260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006437	Potato	plastid	87.87	78.25
KRH23347	Soybean	nucleus	66.26	70.73
Bra031272.1-P	Field mustard	mitochondrion	66.96	68.4
AT3G21300.1	Thale cress	mitochondrion	65.73	67.51
Bra008455.1-P	Field mustard	cytosol	14.41	65.6
Bra019367.1-P	Field mustard	cytosol	14.41	65.6
CDY37612	Canola	cytosol	14.41	65.6
CDY56917	Canola	plastid	66.96	65.35
CDY51452	Canola	plastid	67.14	64.97
VIT_09s0002g02670.t01	Wine grape	plastid	63.8	63.68
EES00136	Sorghum	mitochondrion	60.28	61.47
KRH09984	Soybean	mitochondrion	40.25	61.39
GSMUA_Achr2P19450_001	Banana	cytosol, mitochondrion	64.85	61.3
Zm00001d039477_P001	Maize	plastid	59.75	60.93
TraesCS3D01G108100.1	Wheat	mitochondrion	59.4	60.57
Os01t0193600-01	Rice	mitochondrion, plastid	59.23	60.5
TraesCS3A01G105900.1	Wheat	mitochondrion	59.23	60.29
TraesCS3B01G124400.1	Wheat	mitochondrion	59.05	60.22
CDX88149	Canola	cytosol	13.01	59.68
Bra009808.1-P	Field mustard	cytosol	13.01	59.68
HORVU3Hr1G019340.3	Barley	plastid	59.4	57.39
Solyc11g069340.1.1	Tomato	nucleus	25.31	15.64

Protein Annotations

Gene3D:2.40.50.140	InterPro:23S_rRNA_MeTrfase_RlmD	Gene3D:3.40.1350.30	Gene3D:3.40.50.150	MapMan:50.2.1	GO:GO:0001510
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173
GO:GO:0009409	GO:GO:0009628	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	InterPro:IPR002792
InterPro:IPR010280	UniProt:K4BMS5	InterPro:MeTrfase_TrmA_CS	InterPro:NA-bd_OB-fold	PFAM:PF05958	ScanProsite:PS01231
PFscan:PS50926	PFscan:PS51687	PANTHER:PTHR11061	PANTHER:PTHR11061:SF30	InterPro:SAM-dependent_MTases	SUPFAM:SSF50249
SUPFAM:SSF53335	EnsemblPlantsGene:Solyc03g121260.2	EnsemblPlants:Solyc03g121260.2.1	TIGRFAMs:TIGR00479	InterPro:TRAM_dom	InterPro:U5_MeTrfase_fam
UniParc:UPI000276713F	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:69421394..69427673

Molecular Weight (calculated)

63265.8 Da

IEP (calculated)

7.425

GRAVY (calculated)

-0.215

Length

569 amino acids

Sequence
(BLAST)

001: MAAAAATFGI RSVPSNIWLH KFGARTAAAS IRSRSFTTLA SLSPVEDTED IQLNVIPKED ARELVSNTSN NNNYKSNKSY YPKRGQTLEL VCESLAFKGK
101: GVCKVADSGF VLMCDRALPG ERFIGRVTRK KDNYAEVKKL KTITPHSDYV EAPCEYASHC GGCKTQSLSY EAQLKAKEQQ VRDLVVHVGK FSEQEPEHAG
201: VMKPIVPCDI QFHYRNKMEF SFGPKGWVPA EQLQEKSTDE CVYALGLHAP GFFDKVLNVN KCLLQSDSAN EVLATVQECW RDPELGLSPW NVHSHTGFLK
301: HLMLRSGRNI ETGLPELMVN FVTSSDNPEC LRPLVEKIAT IPEVVSIVNN VNTSIGNTSV GEKEYTLYGK STITEILRGL TFQISANSFF QTNTRQADVL
401: YKLIEDCAFL KGDGSEIVLD LFCGTGTIGL TLAKRVKHVY GFEVVAQAVS DARQNATLNF INNATFIEGD LNKIDSTFAS NLPKPDIVIT DPNRPGMHIK
501: LIKFLLRLRA SRIIYVSCNP ATCARDLNYL CYGVPEQNIE GRYRLSSLQP VDMFPHTPHI ECVCALELR

Best Arabidopsis Sequence Match ( AT3G21300.1 )
(BLAST)

001: MLAATPAHGL RYVVVPTRSW LHRFRCCSSS LAPLSPSEFS GGNKAQKKLN DENNTNVSNE KTAPYYPKRG ETVELVCESL GFKGKGICKV DGTGYVVMCD
101: RALPGERFLG RVTRRKGSYA EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN PGLEIVLKPI VACDIQFHYR
201: NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL
301: ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS
401: EVVLDLFCGT GTIGLTLARR AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP GMHMKLIKFL LKLKSPRIIY
501: VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP HTPHIECVCL LELA

Arabidopsis Description

RNA methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU28]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.