Factsheet for HORVU3Hr1G019340.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G108100.1	Wheat	mitochondrion	91.17	96.24
TraesCS3A01G105900.1	Wheat	mitochondrion	90.49	95.35
TraesCS3B01G124400.1	Wheat	mitochondrion	90.15	95.16
Os01t0193600-01	Rice	mitochondrion, plastid	79.8	84.38
EES00136	Sorghum	mitochondrion	78.61	82.97
Zm00001d039477_P001	Maize	plastid	77.42	81.72
KRH23347	Soybean	nucleus	60.1	66.42
AT3G21300.1	Thale cress	mitochondrion	59.59	63.36
Bra031272.1-P	Field mustard	mitochondrion	59.08	62.48
GSMUA_Achr2P19450_001	Banana	cytosol, mitochondrion	62.99	61.63
CDY51452	Canola	plastid	59.76	59.86
CDY56917	Canola	plastid	59.08	59.69
Solyc03g121260.2.1	Tomato	plastid	57.39	59.4
KRH09984	Soybean	mitochondrion	36.84	58.18
VIT_09s0002g02670.t01	Wine grape	plastid	55.18	57.02
PGSC0003DMT400006437	Potato	plastid	57.89	53.36
Bra008455.1-P	Field mustard	cytosol	11.04	52.0
CDY37612	Canola	cytosol	11.04	52.0
Bra019367.1-P	Field mustard	cytosol	11.04	52.0
CDX88149	Canola	cytosol	10.19	48.39
Bra009808.1-P	Field mustard	cytosol	10.19	48.39
HORVU2Hr1G093310.1	Barley	cytosol	3.57	26.25
HORVU2Hr1G005690.1	Barley	nucleus	24.79	15.97
HORVU2Hr1G093250.1	Barley	cytosol, nucleus, plastid	3.23	13.19

Protein Annotations

Gene3D:2.40.50.140	InterPro:23S_rRNA_MeTrfase_RlmD	Gene3D:3.40.1350.30	Gene3D:3.40.50.150	MapMan:50.2.1	UniProt:A0A287KBV0
GO:GO:0001510	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006396	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008173	GO:GO:0009409	GO:GO:0009628	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259
EnsemblPlantsGene:HORVU3Hr1G019340	EnsemblPlants:HORVU3Hr1G019340.3	InterPro:IPR002792	InterPro:IPR010280	InterPro:MeTrfase_TrmA_CS	InterPro:NA-bd_OB-fold
PFAM:PF05958	ScanProsite:PS01231	PFscan:PS50926	PFscan:PS51687	PANTHER:PTHR11061	PANTHER:PTHR11061:SF30
InterPro:SAM-dependent_MTases	SUPFAM:SSF50249	SUPFAM:SSF53335	TIGRFAMs:TIGR00479	InterPro:TRAM_dom	InterPro:U5_MeTrfase_fam
UniParc:UPI000B462E4A	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:52979651..52984770

Molecular Weight (calculated)

64546.9 Da

IEP (calculated)

7.901

GRAVY (calculated)

-0.177

Length

589 amino acids

Sequence
(BLAST)

001: PVVTEWLPPS SAAPSPPSAV NPHRATPTAQ MAAAGAFSPL SGTLLRRRIP LHHHRRFLSI AAAASEAPAP APTPSQPPPP PPRPRGKGYF PKKNEILELT
101: CEGLAFKGKG VCKVDGSSFV LLCDGALPGE RLVARVRRLR RGAFAEAAKL KTLSPHHDAV EAPCPLAADC GGCKSQSLAY SAQIHHKYVQ VRDLLVNFGK
201: FDPRKLESSD SDAILKPIVP CDEIFRYRNK MEFSFGTKRW MKREWKEEKE EVSKGEELET DGYSLGLHAP GFFDKVLHVE TCLLHSDPAD KVLAVVQGSW
301: TDPALGLTPY DVYKHTGFLK HLMIRTGRNV STGAPEVMVN FVTSCYKPEL LVPLVDRITK ISEVVSVVNN VNTSVGNTSV GEQEYTLYGK PTITEMLRGL
401: TFQISANSFF QTNTKQADVL YKLIEDSAGL KGDGSEIVLD LFCGTGTIGL TLARSAKHVY GYEVVPEAIA DAQKNAQLNG ISNATFVQGD LNKINVTFGK
501: EFPKPDIIIS DPNRPGMHMK LIKWLLEVKA PRIVYVSCNP ATCARDLDYL CHGVEEKGLS GCYELKHVIP VDMFPHTPHI ECVCLLELC

Best Arabidopsis Sequence Match ( AT3G21300.1 )
(BLAST)

001: MLAATPAHGL RYVVVPTRSW LHRFRCCSSS LAPLSPSEFS GGNKAQKKLN DENNTNVSNE KTAPYYPKRG ETVELVCESL GFKGKGICKV DGTGYVVMCD
101: RALPGERFLG RVTRRKGSYA EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN PGLEIVLKPI VACDIQFHYR
201: NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL
301: ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS
401: EVVLDLFCGT GTIGLTLARR AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP GMHMKLIKFL LKLKSPRIIY
501: VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP HTPHIECVCL LELA

Arabidopsis Description

RNA methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU28]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.