Factsheet for GSMUA_Achr2P19450_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008455.1-P	Field mustard	cytosol	15.28	73.6
Bra019367.1-P	Field mustard	cytosol	15.28	73.6
CDY37612	Canola	cytosol	15.28	73.6
KRH23347	Soybean	nucleus	63.79	72.05
Bra031272.1-P	Field mustard	mitochondrion	64.78	70.02
AT3G21300.1	Thale cress	mitochondrion	63.95	69.49
CDY56917	Canola	plastid	64.62	66.72
CDY51452	Canola	plastid	64.95	66.5
VIT_09s0002g02670.t01	Wine grape	plastid	62.46	65.96
EES00136	Sorghum	mitochondrion	60.96	65.77
Os01t0193600-01	Rice	mitochondrion, plastid	60.8	65.71
TraesCS3D01G108100.1	Wheat	mitochondrion	60.8	65.59
TraesCS3B01G124400.1	Wheat	mitochondrion	60.63	65.41
TraesCS3A01G105900.1	Wheat	mitochondrion	60.63	65.3
Solyc03g121260.2.1	Tomato	plastid	61.3	64.85
CDX88149	Canola	cytosol	13.29	64.52
Bra009808.1-P	Field mustard	cytosol	13.29	64.52
Zm00001d039477_P001	Maize	plastid	59.63	64.34
HORVU3Hr1G019340.3	Barley	plastid	61.63	62.99
KRH09984	Soybean	mitochondrion	38.87	62.73
PGSC0003DMT400006437	Potato	plastid	61.13	57.59
GSMUA_Achr5P18520_001	Banana	cytosol	7.81	28.14
GSMUA_Achr5P18510_001	Banana	nucleus	18.11	16.57

Protein Annotations

Gene3D:2.40.50.140	InterPro:23S_rRNA_MeTrfase_RlmD	Gene3D:3.40.1350.30	Gene3D:3.40.50.150	MapMan:50.2.1	GO:GO:0001510
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173
GO:GO:0009409	GO:GO:0009628	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	EnsemblPlantsGene:GSMUA_Achr2G19450_001
EnsemblPlants:GSMUA_Achr2P19450_001	EnsemblPlants:GSMUA_Achr2T19450_001	InterPro:IPR002792	InterPro:IPR010280	UniProt:M0S9D6	InterPro:MeTrfase_TrmA_CS
InterPro:NA-bd_OB-fold	PFAM:PF05958	ScanProsite:PS01231	PFscan:PS50926	PFscan:PS51687	PANTHER:PTHR11061
PANTHER:PTHR11061:SF30	InterPro:SAM-dependent_MTases	SUPFAM:SSF50249	SUPFAM:SSF53335	TIGRFAMs:TIGR00479	InterPro:TRAM_dom
InterPro:U5_MeTrfase_fam	UniParc:UPI0002957998	SEG:seg	:	:	:

Description

Putative Uncharacterized RNA methyltransferase CT0009 [Source:GMGC_GENE;Acc:GSMUA_Achr2G19450_001]

Coordinates

chr2:-:19509460..19519211

Molecular Weight (calculated)

66914.5 Da

IEP (calculated)

8.064

GRAVY (calculated)

-0.189

Length

602 amino acids

Sequence
(BLAST)

001: MRSDLFNLHH DRNYRCQRTL HQNFRQDLMP AICLIEFLVF SVTRPASMAV AAFPSCGARR LNARPWLHAV RASASSPSPS ASPLPPPPEI DALAAPPRSD
101: SAAAVAPTPR SFFPKRGQTL ELVCESLAFK GKGVCKVADT AFVVMCDRAL PGERFLGRVT RKKGSYAEAT KLKTITPHRD AVEAPCQYAS YCGGCKTQNL
201: SYEAQVRAKE QQVRDLIVHV GRFSDKDPDF VAIFKPIVPC DLQFHYRNKM EFSFGAERWM PRDVSSGKEE QMEIGYALGL HAPGFFDKVL HVDKCLLQTE
301: ATNKVLAVIQ DSWRDPKLGL SPYNVHTHAG FLKHLMLRAG RDVNTSNPEV MVNFVTSSYE PNLLKPLVDK ISAIPEVVSV MNNVNTSVGN TSVGEEEYTL
401: YGKSTITEML RGLTFQISAN SFFQTNSHQA EVLYKLIEDC AGLRGDSSEI VLDLFCGTGS IGLSLARRVK HVYGYEVVAE AISDARRNAK FNGIHNATFV
501: QGDLNKINDS FGNDFPKPDI VISDPNRPGM HMKLIKYLLE LQAPRIVYVS CNPSTLARDL DYLCHGLAEK GIRGCYHLRS VQPVDMFPHT PHIECVCLLE
601: LC

Best Arabidopsis Sequence Match ( AT3G21300.1 )
(BLAST)

001: MLAATPAHGL RYVVVPTRSW LHRFRCCSSS LAPLSPSEFS GGNKAQKKLN DENNTNVSNE KTAPYYPKRG ETVELVCESL GFKGKGICKV DGTGYVVMCD
101: RALPGERFLG RVTRRKGSYA EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN PGLEIVLKPI VACDIQFHYR
201: NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL
301: ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS
401: EVVLDLFCGT GTIGLTLARR AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP GMHMKLIKFL LKLKSPRIIY
501: VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP HTPHIECVCL LELA

Arabidopsis Description

RNA methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU28]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.