CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09984	Soybean	mitochondrion	58.16	83.11
Bra008455.1-P	Field mustard	cytosol	16.7	71.2
CDY37612	Canola	cytosol	16.7	71.2
Bra019367.1-P	Field mustard	cytosol	16.7	71.2
Bra031272.1-P	Field mustard	mitochondrion	73.92	70.74
AT3G21300.1	Thale cress	mitochondrion	72.61	69.86
CDY56917	Canola	plastid	74.48	68.1
CDY51452	Canola	plastid	74.67	67.69
Solyc03g121260.2.1	Tomato	plastid	70.73	66.26
VIT_09s0002g02670.t01	Wine grape	plastid	69.42	64.91
GSMUA_Achr2P19450_001	Banana	cytosol, mitochondrion	72.05	63.79
EES00136	Sorghum	mitochondrion	66.42	63.44
TraesCS3D01G108100.1	Wheat	mitochondrion	66.42	63.44
TraesCS3B01G124400.1	Wheat	mitochondrion	66.42	63.44
TraesCS3A01G105900.1	Wheat	mitochondrion	66.23	63.15
Os01t0193600-01	Rice	mitochondrion, plastid	65.85	63.02
CDX88149	Canola	cytosol	14.63	62.9
Bra009808.1-P	Field mustard	cytosol	14.63	62.9
Zm00001d039477_P001	Maize	plastid	65.48	62.54
HORVU3Hr1G019340.3	Barley	plastid	66.42	60.1
PGSC0003DMT400006437	Potato	plastid	70.73	59.0
KRH54851	Soybean	cytosol	6.19	25.78
KRH24877	Soybean	nucleus	27.77	16.67
KRH29928	Soybean	nucleus	27.77	16.63

Protein Annotations

EntrezGene:100777466	Gene3D:2.40.50.140	InterPro:23S_rRNA_MeTrfase_RlmD	Gene3D:3.40.1350.30	Gene3D:3.40.50.150	MapMan:50.2.1
EMBL:ACUP02008462	EnsemblPlantsGene:GLYMA_13G352500	GO:GO:0001510	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0008173	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	InterPro:IPR002792
InterPro:IPR010280	UniProt:K7M3P6	EnsemblPlants:KRH23347	ProteinID:KRH23347	ProteinID:KRH23347.1	InterPro:MeTrfase_TrmA_CS
InterPro:NA-bd_OB-fold	PFAM:PF05958	ScanProsite:PS01231	PFscan:PS50926	PFscan:PS51687	PANTHER:PTHR11061
PANTHER:PTHR11061:SF30	InterPro:SAM-dependent_MTases	SUPFAM:SSF50249	SUPFAM:SSF53335	TIGRFAMs:TIGR00479	InterPro:TRAM_dom
InterPro:U5_MeTrfase_fam	UniParc:UPI000233B0A3	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:44137637..44142155

Molecular Weight (calculated)

59810.1 Da

IEP (calculated)

7.601

GRAVY (calculated)

-0.160

Length

533 amino acids

Sequence
(BLAST)

001: MTSISYLTNT LLPLHIRRFR PSLSTLSCSL ASDVDPTPNS YFPKRGQTLE LVCESLAFKG KGLCKVTQTG FVVLCDRALP GEHFIGRVTR KKGNYAEVTK
101: VKTITPPRDI VDAPCVYAPY CGGCKTQNLS YEAQLRAKEE QVRDLLIHVG KFSLQHLQLH AVLKPIVPCR IQFHYRNKME FSFGPQRWLP KESLQDRIVD
201: DDTNENYALG LHAPGFFDKI LNVDNCLLQS HPANKVLAAV QECWRDPQLG FSPYNVHSHK GFLKHLMLRT GRDVTTDQPE VMVNFVTSSY KPELLKFLVD
301: KVSVFPEVVS VINNVNTSVG NTSVGEEEYT LYGKSSITET LRGLTFQISA NSFFQTNTYQ AEVLYKLIED CAGVKGDDSE IVLDLFCGTG TIGLTLARSV
401: RHVYGYEVVP QAITDARLNA KINGIQNATF VQGDLNKIDE NFGKNFPKPD IVISDPNRPG MHIKLIKFLL NLRAPRIVYV SCNPATCARD LDYLCHGVEE
501: KNIEGCYKLI SLQPVDMFPH TPHIECVCLL ELQ

Best Arabidopsis Sequence Match ( AT3G21300.1 )
(BLAST)

001: MLAATPAHGL RYVVVPTRSW LHRFRCCSSS LAPLSPSEFS GGNKAQKKLN DENNTNVSNE KTAPYYPKRG ETVELVCESL GFKGKGICKV DGTGYVVMCD
101: RALPGERFLG RVTRRKGSYA EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN PGLEIVLKPI VACDIQFHYR
201: NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL
301: ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS
401: EVVLDLFCGT GTIGLTLARR AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP GMHMKLIKFL LKLKSPRIIY
501: VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP HTPHIECVCL LELA

Arabidopsis Description

RNA methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU28]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.