CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008455.1-P	Field mustard	cytosol	100.0	100.0
Bra019367.1-P	Field mustard	cytosol	100.0	100.0
CDX88149	Canola	cytosol	73.6	74.19
CDY51452	Canola	plastid	92.0	19.56
CDY56917	Canola	plastid	91.2	19.55
AT3G21300.1	Thale cress	mitochondrion	84.0	18.95
KRH23347	Soybean	nucleus	71.2	16.7
GSMUA_Achr2P19450_001	Banana	cytosol, mitochondrion	73.6	15.28
VIT_09s0002g02670.t01	Wine grape	plastid	68.0	14.91
Solyc03g121260.2.1	Tomato	plastid	65.6	14.41
PGSC0003DMT400006437	Potato	plastid	66.4	12.99
Os01t0193600-01	Rice	mitochondrion, plastid	53.6	12.03
TraesCS3B01G124400.1	Wheat	mitochondrion	52.8	11.83
TraesCS3D01G108100.1	Wheat	mitochondrion	52.8	11.83
EES00136	Sorghum	mitochondrion	52.0	11.65
TraesCS3A01G105900.1	Wheat	mitochondrion	52.0	11.63
Zm00001d039477_P001	Maize	plastid	49.6	11.11
HORVU3Hr1G019340.3	Barley	plastid	52.0	11.04
KRH09984	Soybean	mitochondrion	29.6	9.92
CDY60348	Canola	golgi, vacuole	15.2	3.47
CDY60349	Canola	nucleus	12.0	2.98
CDY04566	Canola	nucleus	12.0	1.98
CDY15748	Canola	nucleus	12.0	1.96

Protein Annotations

Gene3D:2.40.50.140	Gene3D:3.40.50.150	MapMan:35.2	UniProt:A0A078HIF8	EnsemblPlants:CDY37612	ProteinID:CDY37612
ProteinID:CDY37612.1	GO:GO:0001510	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0008173	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00064247001
InterPro:IPR010280	InterPro:NA-bd_OB-fold	PANTHER:PTHR11061	PANTHER:PTHR11061:SF30	InterPro:SAM-dependent_MTases	SUPFAM:SSF50249
SUPFAM:SSF53335	InterPro:U5_MeTrfase_fam	UniParc:UPI0002540D9F	:	:	:

Description

BnaA02g19580DBnaA02g19580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIF8]

Coordinates

chrLK032403:+:304688..305557

Molecular Weight (calculated)

13791.7 Da

IEP (calculated)

7.704

GRAVY (calculated)

-0.086

Length

125 amino acids

Sequence
(BLAST)

001: MELVCESLGF KGKGICKVHG TVFVVICDRA LPGERFLGCV TRRKGSYAEV TKIKTLTPHR DLVEAPCEYA SYCGGCKAQN LSYEAQLRAK DEQVHELITH
101: VGRFSDNSPG LETVLKAIVP CDIQF

Best Arabidopsis Sequence Match ( AT3G21300.1 )
(BLAST)

001: MLAATPAHGL RYVVVPTRSW LHRFRCCSSS LAPLSPSEFS GGNKAQKKLN DENNTNVSNE KTAPYYPKRG ETVELVCESL GFKGKGICKV DGTGYVVMCD
101: RALPGERFLG RVTRRKGSYA EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN PGLEIVLKPI VACDIQFHYR
201: NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL
301: ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS
401: EVVLDLFCGT GTIGLTLARR AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP GMHMKLIKFL LKLKSPRIIY
501: VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP HTPHIECVCL LELA

Arabidopsis Description

RNA methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU28]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.