CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039477_P001	Maize	plastid	94.27	94.27
TraesCS3B01G124400.1	Wheat	mitochondrion	83.87	83.87
TraesCS3D01G108100.1	Wheat	mitochondrion	83.69	83.69
TraesCS3A01G105900.1	Wheat	mitochondrion	83.69	83.54
Os01t0193600-01	Rice	mitochondrion, plastid	83.33	83.48
HORVU3Hr1G019340.3	Barley	plastid	82.97	78.61
KRH23347	Soybean	nucleus	63.44	66.42
AT3G21300.1	Thale cress	mitochondrion	63.26	63.72
Bra031272.1-P	Field mustard	mitochondrion	63.26	63.38
GSMUA_Achr2P19450_001	Banana	cytosol, mitochondrion	65.77	60.96
CDY56917	Canola	plastid	63.44	60.72
CDY51452	Canola	plastid	63.62	60.37
Solyc03g121260.2.1	Tomato	plastid	61.47	60.28
KRH09984	Soybean	mitochondrion	39.07	58.45
VIT_09s0002g02670.t01	Wine grape	plastid	59.5	58.25
PGSC0003DMT400006437	Potato	plastid	61.29	53.52
CDY37612	Canola	cytosol	11.65	52.0
Bra019367.1-P	Field mustard	cytosol	11.65	52.0
Bra008455.1-P	Field mustard	cytosol	11.65	52.0
CDX88149	Canola	cytosol	10.75	48.39
Bra009808.1-P	Field mustard	cytosol	10.75	48.39
EES10334	Sorghum	nucleus	26.52	17.17

Protein Annotations

Gene3D:2.40.50.140	InterPro:23S_rRNA_MeTrfase_RlmD	Gene3D:3.40.1350.30	Gene3D:3.40.50.150	MapMan:50.2.1	EntrezGene:8084349
UniProt:C5XLX5	ncoils:Coil	EnsemblPlants:EES00136	ProteinID:EES00136	ProteinID:EES00136.1	GO:GO:0001510
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173
GO:GO:0009409	GO:GO:0009628	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	InterPro:IPR002792
InterPro:IPR010280	InterPro:MeTrfase_TrmA_CS	InterPro:NA-bd_OB-fold	PFAM:PF05958	ScanProsite:PS01231	PFscan:PS50926
PFscan:PS51687	PANTHER:PTHR11061	PANTHER:PTHR11061:SF30	InterPro:SAM-dependent_MTases	EnsemblPlantsGene:SORBI_3003G033100	SUPFAM:SSF50249
SUPFAM:SSF53335	TIGRFAMs:TIGR00479	InterPro:TRAM_dom	InterPro:U5_MeTrfase_fam	UniParc:UPI0001A84433	RefSeq:XP_002455016.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:3050505..3055278

Molecular Weight (calculated)

61628.9 Da

IEP (calculated)

8.243

GRAVY (calculated)

-0.169

Length

558 amino acids

Sequence
(BLAST)

001: MAAHAVTPLT ICRLRRGVPL HHSRRLLAVA AAAPEAPAPP PAISQSPPSP VPPRKGYFPK RGETVELTCE ALAFKGKGVC KVAGSTFVLL CDGALPGERL
101: VARVSRLRRG AFAEAAKLRT LEPHHDAVEA PCPLAADCGG CKTQTLAYAA QIRHKHLQVR DLLVNFGKFD PKRMESSEPD AILKPIVPCD EIFRYRNKME
201: FSFGTKRWVQ KELKGKDEEV GVKQETNETD GYALGLHAPG FFDKVLHVQK CFLQSEPADK VLAVVQETWM DPAVGLTPYD VHKHVGFLKH LMIRTGRNVS
301: TGTPEVMVNF VTPCYKPDLL MPLVDKITKI PEVVSIINNV NSSVGNTSVG EQEYTLYGKP NITEMLRGLT FQISANSFFQ TNTKQADVLY KLIEDSAGLK
401: GDGSEIVLDL FCGTGTIGLT LARRAKHVYG YEVVPEAIAD ARKNAKLNGI DNATFVQGDL NKINESFGKE FPKPDIIISD PNRPGMHMKL IKWLLEVKAP
501: RIVYVSCNPA TCARDLDYLC HGVEEKDLRG FYDLKSVIPV DMFPHTPHIE CVCLLELR

Best Arabidopsis Sequence Match ( AT3G21300.1 )
(BLAST)

001: MLAATPAHGL RYVVVPTRSW LHRFRCCSSS LAPLSPSEFS GGNKAQKKLN DENNTNVSNE KTAPYYPKRG ETVELVCESL GFKGKGICKV DGTGYVVMCD
101: RALPGERFLG RVTRRKGSYA EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN PGLEIVLKPI VACDIQFHYR
201: NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL
301: ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS
401: EVVLDLFCGT GTIGLTLARR AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP GMHMKLIKFL LKLKSPRIIY
501: VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP HTPHIECVCL LELA

Arabidopsis Description

RNA methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU28]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.