CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004541_P009	Maize	nucleus	91.65	92.61
Zm00001d024928_P003	Maize	nucleus	88.17	86.86
Os04t0105000-01	Rice	nucleus	38.17	67.56
TraesCS2B01G051800.1	Wheat	nucleus	67.17	64.69
HORVU2Hr1G005690.1	Barley	nucleus	67.98	64.11
TraesCS2A01G039200.1	Wheat	nucleus	66.71	62.5
TraesCS2D01G037700.2	Wheat	nucleus	66.59	62.39
CDY60349	Canola	nucleus	33.06	56.55
CDY04566	Canola	nucleus	48.49	55.29
CDY15748	Canola	nucleus	48.61	54.77
VIT_06s0004g02940.t01	Wine grape	nucleus	51.74	52.91
Bra011947.1-P	Field mustard	nucleus	47.8	52.48
AT2G28450.1	Thale cress	nucleus	46.87	49.94
GSMUA_Achr5P18510_001	Banana	nucleus	37.01	48.48
CDY60348	Canola	golgi, vacuole	30.74	48.36
KRH24877	Soybean	nucleus	49.65	48.2
KRH29928	Soybean	nucleus	49.3	47.75
Solyc11g069340.1.1	Tomato	nucleus	49.19	46.04
KRH54851	Soybean	cytosol	5.45	36.72
EES00136	Sorghum	mitochondrion	17.17	26.52

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.70.330	Gene3D:3.40.50.150	Gene3D:4.10.1000.10	EntrezGene:8080240	UniProt:C5YB95
ncoils:Coil	EnsemblPlants:EES10334	ProteinID:EES10334	ProteinID:EES10334.1	GO:GO:0001510	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0008173	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259
GO:GO:0046872	InterPro:IPR000571	InterPro:IPR010280	InterPro:IPR012677	InterPro:MeTrfase_TrmA_AS	InterPro:Methyltranfer_dom
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00642	PFAM:PF05958	PFAM:PF13847	ScanProsite:PS01230	PFscan:PS50103
PFscan:PS51687	PANTHER:PTHR11061	PANTHER:PTHR11061:SF24	InterPro:RBD_domain_sf	InterPro:SAM-dependent_MTases	SMART:SM00356
EnsemblPlantsGene:SORBI_3006G002800	SUPFAM:SSF53335	SUPFAM:SSF54928	SUPFAM:SSF90229	unigene:Sbi.18550	InterPro:U5_MeTrfase_fam
UniParc:UPI0001A86B95	RefSeq:XP_002446006.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:468736..476400

Molecular Weight (calculated)

93681.0 Da

IEP (calculated)

5.038

GRAVY (calculated)

-0.521

Length

862 amino acids

Sequence
(BLAST)

001: MEDVLTPPPP PPQQQQQPEL AGEKRKREEG SVDASTEDAP SAPASTGSAE DAAGSGVARH PMWKTSLCSF FRRRGAGAEG CSHGESCRYA HTEEELRPRP
101: DGTWDPTSDR AKKLRKVAAE AQEEAEEEVT VDEQALDKCL VGLPRGWTAD RLKSFLQEQE ISYATAKKKK GMTVGFVTFQ SVEQLTNAVQ VLKENPSGGK
201: EIKIVDANRR SHQKAHVEAP VSNTGTATEN GSSPTNAEET PAPESDSSSK RSARDAVTPL AHMTYIDQLE HKKQSMAQIL KKLTRNARKA CPPAIPLPDW
301: VLKSKEIGGL PCKLEGILES PVVNGYRNKC EFSVGYSLEG KKTVGFMLGN FREGVTAVEE PVNCPNVSEI SCKYAQMFQD FLQSSGFPLW SKIDNSGFWR
401: QLTVREGRCP AEAVVSQNAE SQISEVMLIV QVCSTGVDEA LMKEEFDKLS AALIQGAATC SPPLPLTTIV VQDHKGISNA APTDCPLIPL LVPNGDQLDG
501: TTEDKTRIHD HISNLKFSIS PTAFFQVNTL AAERLYTLAG DWANLNSDTL LFDVCCGTGT IGLTLAHRVG MVVGIEMNES AVSDAHKNAL INGIKNCRFV
601: CSKAEDVMGP LLTEYLGSPQ QQAAASESNS EIDDTNKNED TIDCTNCDGE NIDSSKHRND NGEGQQPMDT SVDYPTCASN EEVDGVNKVV DCSHDEHNVA
701: SGEQNCGEAS LLNDKPIETS SDNSLEQGKA CQDGSSNPND NVLAANACQF KNVVAIVDPP RVGLHPTVIK ALRTHPRIRR LVYISCNPES LVANAIELCT
801: PTSEKQEKNK GNRGWRSMSS AGLARQRTKS MPNSEPFIPK RAMAVDLFPH TPHCEMVMLF ER

Best Arabidopsis Sequence Match ( AT2G28450.1 )
(BLAST)

001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER

Arabidopsis Description

Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.