Factsheet for VIT_06s0004g02940.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60349	Canola	nucleus	35.23	58.93
CDY04566	Canola	nucleus	52.67	58.73
CDY15748	Canola	nucleus	52.19	57.52
KRH29928	Soybean	nucleus	59.55	56.4
KRH24877	Soybean	nucleus	59.31	56.31
Bra011947.1-P	Field mustard	nucleus	52.43	56.31
AT2G28450.1	Thale cress	nucleus	52.08	54.26
Solyc11g069340.1.1	Tomato	nucleus	57.77	52.88
EES10334	Sorghum	nucleus	52.91	51.74
Zm00001d004541_P009	Maize	nucleus	52.19	51.58
CDY60348	Canola	golgi, vacuole	32.38	49.82
GSMUA_Achr5P18510_001	Banana	nucleus	38.2	48.94
Zm00001d024928_P003	Maize	nucleus	50.53	48.69
TraesCS2B01G051800.1	Wheat	nucleus	51.6	48.6
Os04t0105000-01	Rice	nucleus	27.28	47.23
HORVU2Hr1G005690.1	Barley	nucleus	51.01	47.05
TraesCS2A01G039200.1	Wheat	nucleus	51.25	46.96
TraesCS2D01G037700.2	Wheat	nucleus	50.89	46.63
KRH54851	Soybean	cytosol	6.52	42.97
VIT_09s0002g02670.t01	Wine grape	plastid	15.42	22.81

Protein Annotations

EntrezGene:100262197	wikigene:100262197	MapMan:15.5.16	Gene3D:3.30.70.330	Gene3D:3.40.1350.30	Gene3D:4.10.1000.10
ProteinID:CCB43666	ProteinID:CCB43666.1	ncoils:Coil	UniProt:F6GU02	EMBL:FN594951	GO:GO:0001510
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173	GO:GO:0009987
GO:GO:0016740	GO:GO:0032259	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR010280
InterPro:IPR012677	EntrezGene:LOC100262197	wikigene:LOC100262197	InterPro:MeTrfase_TrmA_AS	InterPro:Methyltranfer_dom	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00642	PFAM:PF05958	PFAM:PF13847	ScanProsite:PS01230	PFscan:PS50102
PFscan:PS50103	PFscan:PS51687	PANTHER:PTHR11061	PANTHER:PTHR11061:SF24	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:SAM-dependent_MTases	SMART:SM00356	SMART:SM00360	SUPFAM:SSF53335	SUPFAM:SSF54928	SUPFAM:SSF90229
InterPro:U5_MeTrfase_fam	UniParc:UPI000210A8E1	ArrayExpress:VIT_06s0004g02940	EnsemblPlantsGene:VIT_06s0004g02940	EnsemblPlants:VIT_06s0004g02940.t01	RefSeq:XP_002282314
RefSeq:XP_002282314.2	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:3662087..3675702

Molecular Weight (calculated)

92113.0 Da

IEP (calculated)

6.322

GRAVY (calculated)

-0.488

Length

843 amino acids

Sequence
(BLAST)

001: MASSPEDQTS AKQTLNPSIN GNDAPCPPQE HVGDEELKPS VPQSTDVIES GEKRKRSDPA DSDNCRHPLW KTSLCSYFRS HSGSCSHGDA CRYAHGEEEL
101: RQRPDNTWDP TSERAKKLLK SESGEKCDSK EDDVMMTEAV VDDDCADPGL SKCLLHLPPK WHSDQLRDFL GQQGVIYKSA KKKKGMMIGF VTFESAEQLK
201: NAMEELEGKS IGNKNLKVGD ILPRSFEKKN NSALPLHQST QKNMETALGG DDTDVSMSSF GLEDGDAVCD SSASDSVLKA RSARDVATPL AHLTYTDQLE
301: HKKNSLMQTL KKLTRNARKA CPNGVSLPEW ILKSREIGGL PCKFEGILES PLVNGYRNKC EFSVGYSLQG KPTVGFMLGN FREGITAVEE PADCPNVSMI
401: ARRYATIFQE FLQHSGLPLW NRFNNTGFWR QLTVREGRKP GKAAEAKISE PSISEVLVMV QVCSKGIDDE ILNGEFERLA QAFTMGATAS SPLPLTALVV
501: QDHKGISNVA SADAPLRPLP IPKEGSDSGP DAGGQIVEAR IHDYISNLRF CISPTAFFQV NTLAAEKLYS LAGDWAGLGP DTLLFDVCCG TGTIGLTLAH
601: RVGMVVGIEM NASAVSDAQR NAELNGIKNC RFVCAKAEDV MGSLLKEYLS VPQRQNEVPD FSQSDDKVIS NSEDKMESIN NALNPEGSSS HELESGKGAS
701: GCLENVQRES KNELHNGCSS KDGNISVRQF KNFVAIVDPP RGGLHPIVIK ALRTHACLRR LVYISCNPES LVANAIELCT PSADKTEKGN KNNRGWRNMS
801: SAGLARHRAK SMPNSEPFQP VKAMAVDLFP HTPHCEMVML LER

Best Arabidopsis Sequence Match ( AT2G28450.1 )
(BLAST)

001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER

Arabidopsis Description

Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.