Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0004g02940.t01 | Wine grape | nucleus | 52.88 | 57.77 |
| CDY60349 | Canola | nucleus | 31.38 | 57.34 |
| CDY04566 | Canola | nucleus | 46.8 | 57.01 |
| CDY15748 | Canola | nucleus | 46.15 | 55.56 |
| KRH29928 | Soybean | nucleus | 53.2 | 55.06 |
| Bra011947.1-P | Field mustard | nucleus | 46.69 | 54.78 |
| KRH24877 | Soybean | nucleus | 52.33 | 54.28 |
| AT2G28450.1 | Thale cress | nucleus | 46.36 | 52.78 |
| EES10334 | Sorghum | nucleus | 46.04 | 49.19 |
| Zm00001d004541_P009 | Maize | nucleus | 45.49 | 49.12 |
| CDY60348 | Canola | golgi, vacuole | 28.99 | 48.72 |
| TraesCS2B01G051800.1 | Wheat | nucleus | 46.91 | 48.27 |
| HORVU2Hr1G005690.1 | Barley | nucleus | 47.67 | 48.03 |
| TraesCS2D01G037700.2 | Wheat | nucleus | 46.91 | 46.96 |
| Os04t0105000-01 | Rice | nucleus | 24.54 | 46.41 |
| Zm00001d024928_P003 | Maize | nucleus | 43.97 | 46.29 |
| GSMUA_Achr5P18510_001 | Banana | nucleus | 33.01 | 46.2 |
| TraesCS2A01G039200.1 | Wheat | nucleus | 46.15 | 46.2 |
| KRH54851 | Soybean | cytosol | 6.08 | 43.75 |
| Solyc03g121260.2.1 | Tomato | plastid | 15.64 | 25.31 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.70.330 | Gene3D:3.40.1350.30 | Gene3D:4.10.1000.10 | ncoils:Coil | GO:GO:0001510 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008173 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0032259 | GO:GO:0046872 | InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR010280 |
| InterPro:IPR012677 | UniProt:K4DA90 | InterPro:MeTrfase_TrmA_AS | InterPro:Methyltranfer_dom | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00642 |
| PFAM:PF05958 | PFAM:PF13847 | ScanProsite:PS01230 | PFscan:PS50103 | PFscan:PS51687 | PANTHER:PTHR11061 |
| PANTHER:PTHR11061:SF24 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:SAM-dependent_MTases | SMART:SM00356 | SMART:SM00360 |
| SUPFAM:SSF53335 | SUPFAM:SSF54928 | SUPFAM:SSF90229 | EnsemblPlantsGene:Solyc11g069340.1 | EnsemblPlants:Solyc11g069340.1.1 | InterPro:U5_MeTrfase_fam |
| UniParc:UPI000276A93A | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr11:+:53940738..53951906
Molecular Weight (calculated)
100714.0 Da
IEP (calculated)
4.906
GRAVY (calculated)
-0.505
Length
921 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTETVNPEL NGEESSEKLH SPVIVKSELN GDDSSEHLQL PETLKTELNG EDSSEQLHSS AIVKPELNGD ESSELVKLTE ALAEPTEKRK REGSETVTET
101: EQKQQNPLWK TTLCSYFRRN DGSCSHGESC RYAHGESELR VRPDNTWDPT SDRAKKMAKT AADDDGEKAE DKEEKCNDVM MTEALDDDEC SSVSGLSKCL
201: VNLPMKWSSD NLRCFLKEHG VTFKSAKKKK GMAVGFATFE NAEQVKTAVK ELDGKPAGNK ILKVGDIIPR AFERKGNSAM SSFRTNQQGE KQTEAGDGLD
301: LTKISEETEA EDPVTSDSVL KGRCVRDVVT PLAKMPYADQ LEQKKSSLTR TLKTLTRNAR KACPNGVPLP EWILKAREIG GLPCELEGII ESPLITGYRN
401: KCEFSAGFSV LGKPTVGFQL GNFREGVTAV EEPVDCPNVS RIACKYAAIF QEFLQQSTLP IWNRLNNTGF WRQLTVREGR MPGKNVEVEN PSANISEVML
501: IVQVSTLTFD DALVNDELQG LAKAFAMGAS SASPTLPLTA LVVQDHTGIS NVAPADAPLR VLPFSREESY SELHADNAVA EAKIHDFING LKFCISPTAF
601: FQVNTLAAEK LYSLAGDWAS LGPDTLLFDV CCGTGTIGLT LANRVGMVVG IEMNASAVSD AQRNAEINGI KNCRFICGKA EDVMGSVLKE YLASPAKVDG
701: LLDIEEKKNQ ENTTSTEKTD SIVNASKTDG ESSTGSENGK SMCIDQDTTP TENMYSTDRA AEPEEKTGLE CTNGKSLSES SADDTTEPAT QLKKCSSDNL
801: TTPVQHFKNV VAIVDPPRAG LHPTVIKLLR TNSRLRRLVY ISCNPESLVA NAIELCTPSP DESEKGDNRN NRLWRKMSSA TLARHRTKSM PNSEPFKPVK
901: AMAVDLFPHS PHCELVMLLE R
101: EQKQQNPLWK TTLCSYFRRN DGSCSHGESC RYAHGESELR VRPDNTWDPT SDRAKKMAKT AADDDGEKAE DKEEKCNDVM MTEALDDDEC SSVSGLSKCL
201: VNLPMKWSSD NLRCFLKEHG VTFKSAKKKK GMAVGFATFE NAEQVKTAVK ELDGKPAGNK ILKVGDIIPR AFERKGNSAM SSFRTNQQGE KQTEAGDGLD
301: LTKISEETEA EDPVTSDSVL KGRCVRDVVT PLAKMPYADQ LEQKKSSLTR TLKTLTRNAR KACPNGVPLP EWILKAREIG GLPCELEGII ESPLITGYRN
401: KCEFSAGFSV LGKPTVGFQL GNFREGVTAV EEPVDCPNVS RIACKYAAIF QEFLQQSTLP IWNRLNNTGF WRQLTVREGR MPGKNVEVEN PSANISEVML
501: IVQVSTLTFD DALVNDELQG LAKAFAMGAS SASPTLPLTA LVVQDHTGIS NVAPADAPLR VLPFSREESY SELHADNAVA EAKIHDFING LKFCISPTAF
601: FQVNTLAAEK LYSLAGDWAS LGPDTLLFDV CCGTGTIGLT LANRVGMVVG IEMNASAVSD AQRNAEINGI KNCRFICGKA EDVMGSVLKE YLASPAKVDG
701: LLDIEEKKNQ ENTTSTEKTD SIVNASKTDG ESSTGSENGK SMCIDQDTTP TENMYSTDRA AEPEEKTGLE CTNGKSLSES SADDTTEPAT QLKKCSSDNL
801: TTPVQHFKNV VAIVDPPRAG LHPTVIKLLR TNSRLRRLVY ISCNPESLVA NAIELCTPSP DESEKGDNRN NRLWRKMSSA TLARHRTKSM PNSEPFKPVK
901: AMAVDLFPHS PHCELVMLLE R
001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER
Arabidopsis Description
Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.